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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Uncovering new families and folds in the natural protein universe
Janani Durairaj, Andrew Waterhouse, Toomas Mets, et al.
Nature (2023) Vol. 622, Iss. 7983, pp. 646-653
Open Access | Times Cited: 79

Showing 1-25 of 79 citing articles:

Integrating cellular electron microscopy with multimodal data to explore biology across space and time
Caitlyn L McCafferty, Sven Klumpe, Rommie E. Amaro, et al.
Cell (2024) Vol. 187, Iss. 3, pp. 563-584
Open Access | Times Cited: 38
CATH 2024: CATH-AlphaFlow Doubles the Number of Structures in CATH and Reveals Nearly 200 New Folds
Vaishali Waman, Nicola Bordin, Rachel Alcraft, et al.
Journal of Molecular Biology (2024) Vol. 436, Iss. 17, pp. 168551-168551
Open Access | Times Cited: 20
Birth of protein folds and functions in the virome
Jason Nomburg, Erin Doherty, Nathan B. Price, et al.
Nature (2024) Vol. 633, Iss. 8030, pp. 710-717
Open Access | Times Cited: 17
Chemistry Nobel goes to developers of AlphaFold AI that predicts protein structures
Ewen Callaway
Nature (2024) Vol. 634, Iss. 8034, pp. 525-526
Closed Access | Times Cited: 16
Structural phylogenetics unravels the evolutionary diversification of communication systems in gram-positive bacteria and their viruses
David Moi, Charles Bernard, Martin Steinegger, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 30
Overview of AlphaFold2 and breakthroughs in overcoming its limitations
Lei Wang, Zehua Wen, Shiwei Liu, et al.
Computers in Biology and Medicine (2024) Vol. 176, pp. 108620-108620
Closed Access | Times Cited: 12
Birth of new protein folds and functions in the virome
Jason Nomburg, Nathan D. Price, Jennifer A. Doudna
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 10
AlphaFold two years on: Validation and impact
Oleg Kovalevskiy, Juan Mateos-García, Kathryn Tunyasuvunakool
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 34
Open Access | Times Cited: 10
The Pfam protein families database: embracing AI/ML
Typhaine Paysan-Lafosse, Antonina Andreeva, Matthias Blum, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D523-D534
Open Access | Times Cited: 10
The Landscape and Perspectives of the Human Gut Metaproteomics
Zhong-Zhi Sun, Zhibin Ning, Daniel Figeys
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 5, pp. 100763-100763
Open Access | Times Cited: 9
Exploring structural diversity across the protein universe with The Encyclopedia of Domains
Andy M. Lau, Nicola Bordin, Shaun M. Kandathil, et al.
Science (2024) Vol. 386, Iss. 6721
Open Access | Times Cited: 9
Exploring structural diversity across the protein universe with The Encyclopedia of Domains
Andy M. Lau, Nicola Bordin, Shaun M. Kandathil, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Using protein language models for protein interaction hot spot prediction with limited data
Karen Sargsyan, Carmay Lim
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
The inorganic pyrophosphatases of microorganisms: a structural and functional review
Rodolfo García‐Contreras, Javier Mora, Héctor M. Mora‐Montes, et al.
PeerJ (2024) Vol. 12, pp. e17496-e17496
Open Access | Times Cited: 4
Computational protein design
Katherine I. Albanese, Sophie Barbe, Derek N. Woolfson, et al.
Nature Reviews Methods Primers (2025) Vol. 5, Iss. 1
Open Access
Fast and accurate modeling of TCR-peptide-MHC complexes using tFold-TCR
Fandi Wu, Yu Zhao, Yang Xiao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
AlphaFold 2, but not AlphaFold 3, predicts confident but unrealistic β-solenoid structures for repeat proteins
Olivia S. Pratt, Luc Elliott, Margaux Haon, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 467-477
Open Access
The Physics-AI Dialogue in Drug Design
Pablo Andrés Vargas-Rosales, Amedeo Caflisch
RSC Medicinal Chemistry (2025)
Open Access
Architecture remodeling activates the HerA-DUF anti-phage defense system
Anthony D. Rish, Elizabeth Fosuah, Zhangfei Shen, et al.
Molecular Cell (2025)
Closed Access
Tools for Structural Lectinomics: From Structures to Lectomes
Frédérique Lisacek, Boris Schnider, Anne Imberty
BBA Advances (2025), pp. 100154-100154
Open Access
Navigating the unstructured by evaluating alphafold’s efficacy in predicting missing residues and structural disorder in proteins
Sen Zheng
PLoS ONE (2025) Vol. 20, Iss. 3, pp. e0313812-e0313812
Open Access
Computational studies reveal structural characterization and novel families of Puccinia striiformis f. sp. tritici effectors
Raheel Asghar, Nan Wu, Noman Ali, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 3, pp. e1012503-e1012503
Open Access
Enhancing Enzyme Commission Number Prediction With Contrastive Learning and Agent Attention
Wendi Zhao, Qiaoling Han, Fan Yang, et al.
Proteins Structure Function and Bioinformatics (2025)
Closed Access
Dual‐wield NTPases: A novel protein family mined from AlphaFold DB
Koya Sakuma, Ryotaro Koike, Motonori Ota
Protein Science (2024) Vol. 33, Iss. 4
Open Access | Times Cited: 3
GTalign: spatial index-driven protein structure alignment, superposition, and search
Mindaugas Margelevičius
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
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