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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The evolution, evolvability and engineering of gene regulatory DNA
Eeshit Dhaval Vaishnav, Carl G. de Boer, Jennifer Molinet, et al.
Nature (2022) Vol. 603, Iss. 7901, pp. 455-463
Open Access | Times Cited: 196

Showing 1-25 of 196 citing articles:

Metabolic Engineering: Methodologies and Applications
Michael Volk, Vinh Tran, Shih‐I Tan, et al.
Chemical Reviews (2022) Vol. 123, Iss. 9, pp. 5521-5570
Closed Access | Times Cited: 105
Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers
Alexander Karollus, Thomas Mauermeier, Julien Gagneur
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 72
Cell-type-directed design of synthetic enhancers
Ibrahim Ihsan Taskiran, Katina I. Spanier, Hannah Dickmänken, et al.
Nature (2023) Vol. 626, Iss. 7997, pp. 212-220
Open Access | Times Cited: 66
Machine learning dissection of human accelerated regions in primate neurodevelopment
Sean Whalen, Fumitaka Inoue, Hane Ryu, et al.
Neuron (2023) Vol. 111, Iss. 6, pp. 857-873.e8
Open Access | Times Cited: 59
Battery safety: Machine learning-based prognostics
Jingyuan Zhao, Xuning Feng, Quanquan Pang, et al.
Progress in Energy and Combustion Science (2024) Vol. 102, pp. 101142-101142
Open Access | Times Cited: 56
Hold out the genome: a roadmap to solving the cis-regulatory code
Carl G. de Boer, Jussi Taipale
Nature (2023) Vol. 625, Iss. 7993, pp. 41-50
Open Access | Times Cited: 41
Engineering strategies for enhanced heterologous protein production by Saccharomyces cerevisiae
Meirong Zhao, Jianfan Ma, Lei Zhang, et al.
Microbial Cell Factories (2024) Vol. 23, Iss. 1
Open Access | Times Cited: 23
Massively parallel characterization of regulatory elements in the developing human cortex
Chengyu Deng, Sean Whalen, Marilyn Steyert, et al.
Science (2024) Vol. 384, Iss. 6698
Closed Access | Times Cited: 21
Machine-guided design of cell-type-targeting cis-regulatory elements
Sager J. Gosai, Rodrigo Castro, Natalia Fuentes, et al.
Nature (2024) Vol. 634, Iss. 8036, pp. 1211-1220
Open Access | Times Cited: 17
Controlling gene expression with deep generative design of regulatory DNA
Jan Zrimec, Xiaozhi Fu, Azam Sheikh Muhammad, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 58
Evaluating deep learning for predicting epigenomic profiles
Shushan Toneyan, Ziqi Tang, Peter K. Koo
Nature Machine Intelligence (2022) Vol. 4, Iss. 12, pp. 1088-1100
Open Access | Times Cited: 43
Accuracy and data efficiency in deep learning models of protein expression
Evangelos-Marios Nikolados, Arin Wongprommoon, Oisin Mac Aodha, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 40
Universal Cell Embeddings: A Foundation Model for Cell Biology
Yanay Rosen, Yusuf Roohani, Ayush Agrawal, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 39
Enhancer architecture and chromatin accessibility constrain phenotypic space during Drosophila development
Rafael Galupa, Gilberto Álvarez-Canales, Noa Ottilie Borst, et al.
Developmental Cell (2023) Vol. 58, Iss. 1, pp. 51-62.e4
Open Access | Times Cited: 33
Leveraging massively parallel reporter assays for evolutionary questions
Irene Gallego Romero, Amanda J. Lea
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 30
Prediction-powered inference
Anastasios N. Angelopoulos, Stephen Bates, Clara Fannjiang, et al.
Science (2023) Vol. 382, Iss. 6671, pp. 669-674
Open Access | Times Cited: 30
Deep mutational scanning: A versatile tool in systematically mapping genotypes to phenotypes
Huijin Wei, Xianghua Li
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 26
Online monitoring of crack dynamic development using attention-based deep networks
Wang Chen, Zhili He, Jian Zhang
Automation in Construction (2023) Vol. 154, pp. 105022-105022
Closed Access | Times Cited: 25
Natural promoters and promoter engineering strategies for metabolic regulation inSaccharomyces cerevisiae
Shifan He, Zhanwei Zhang, Wenyu Lu
Journal of Industrial Microbiology & Biotechnology (2023) Vol. 50, Iss. 1
Open Access | Times Cited: 24
Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning
Thijs Nieuwkoop, Barbara R. Terlouw, Katherine G. Stevens, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 5, pp. 2363-2376
Open Access | Times Cited: 24
LegNet: a best-in-class deep learning model for short DNA regulatory regions
Dmitry Penzar, Daria Nogina, Elizaveta Noskova, et al.
Bioinformatics (2023) Vol. 39, Iss. 8
Open Access | Times Cited: 22
How to build the virtual cell with artificial intelligence: Priorities and opportunities
Charlotte Bunne, Yusuf Roohani, Yanay Rosen, et al.
Cell (2024) Vol. 187, Iss. 25, pp. 7045-7063
Open Access | Times Cited: 12
Regulatory activity is the default DNA state in eukaryotes
Ishika Luthra, Cassandra Jensen, Xinyi E. Chen, et al.
Nature Structural & Molecular Biology (2024) Vol. 31, Iss. 3, pp. 559-567
Closed Access | Times Cited: 11
Integration of graph neural networks and genome-scale metabolic models for predicting gene essentiality
Ramin Hasibi, Tom Michoel, Diego A. Oyarzún
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 10
Data-driven prediction of colonization outcomes for complex microbial communities
Lu Wu, Xu‐Wen Wang, Zining Tao, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
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