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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Structural variation in the 3D genome
Malte Spielmann, Darío G. Lupiáñez, Stefan Mundlos
Nature Reviews Genetics (2018) Vol. 19, Iss. 7, pp. 453-467
Closed Access | Times Cited: 632

Showing 1-25 of 632 citing articles:

Structural variation in the sequencing era
Steve S. Ho, Alexander E. Urban, Ryan E. Mills
Nature Reviews Genetics (2019) Vol. 21, Iss. 3, pp. 171-189
Open Access | Times Cited: 487
A genomic mutational constraint map using variation in 76,156 human genomes
Siwei Chen, Laurent C. Francioli, Julia K. Goodrich, et al.
Nature (2023) Vol. 625, Iss. 7993, pp. 92-100
Closed Access | Times Cited: 478
Methods for mapping 3D chromosome architecture
Rieke Kempfer, Ana Pombo
Nature Reviews Genetics (2019) Vol. 21, Iss. 4, pp. 207-226
Closed Access | Times Cited: 451
Visualizing DNA folding and RNA in embryos at single-cell resolution
Leslie J. Mateo, Sedona E. Murphy, Antonina Hafner, et al.
Nature (2019) Vol. 568, Iss. 7750, pp. 49-54
Open Access | Times Cited: 396
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
Yad Ghavi-Helm, Aleksander Jankowski, Sascha Meiers, et al.
Nature Genetics (2019) Vol. 51, Iss. 8, pp. 1272-1282
Open Access | Times Cited: 319
Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
Alexandra Despang, Robert Schöpflin, Martin Franke, et al.
Nature Genetics (2019) Vol. 51, Iss. 8, pp. 1263-1271
Closed Access | Times Cited: 283
A genome-wide mutational constraint map quantified from variation in 76,156 human genomes
Siwei Chen, Laurent C. Francioli, Julia K. Goodrich, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 278
The Unfolded Protein Response: Detecting and Responding to Fluctuations in the Protein-Folding Capacity of the Endoplasmic Reticulum
G Elif Karagöz, Diego Acosta‐Alvear, Peter Walter
Cold Spring Harbor Perspectives in Biology (2019) Vol. 11, Iss. 9, pp. a033886-a033886
Open Access | Times Cited: 263
Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement
Ning Yang, Jie Liu, Qiang Gao, et al.
Nature Genetics (2019) Vol. 51, Iss. 6, pp. 1052-1059
Open Access | Times Cited: 239
Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms
Andrés M. Cardozo Gizzi, Diego I. Cattoni, Jean-Bernard Fiche, et al.
Molecular Cell (2019) Vol. 74, Iss. 1, pp. 212-222.e5
Open Access | Times Cited: 223
Regulatory Landscaping: How Enhancer-Promoter Communication Is Sculpted in 3D
Michael I. Robson, Alessa R. Ringel, Stefan Mundlos
Molecular Cell (2019) Vol. 74, Iss. 6, pp. 1110-1122
Open Access | Times Cited: 183
Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription
Yanfen Zhu, Amit D. Gujar, Chee‐Hong Wong, et al.
Cancer Cell (2021) Vol. 39, Iss. 5, pp. 694-707.e7
Open Access | Times Cited: 183
In situ genome sequencing resolves DNA sequence and structure in intact biological samples
Andrew C. Payne, Zachary Chiang, Paul Reginato, et al.
Science (2021) Vol. 371, Iss. 6532
Open Access | Times Cited: 182
Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia
Andreas Kloetgen, Palaniraja Thandapani, Panagiotis Ntziachristos, et al.
Nature Genetics (2020) Vol. 52, Iss. 4, pp. 388-400
Open Access | Times Cited: 179
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
Bjørt K. Kragesteen, Malte Spielmann, Christina Paliou, et al.
Nature Genetics (2018) Vol. 50, Iss. 10, pp. 1463-1473
Open Access | Times Cited: 177
Topologically associating domain boundaries that are stable across diverse cell types are evolutionarily constrained and enriched for heritability
Evonne McArthur, John A. Capra
The American Journal of Human Genetics (2021) Vol. 108, Iss. 2, pp. 269-283
Open Access | Times Cited: 168
DeepC: predicting 3D genome folding using megabase-scale transfer learning
Ron Schweßinger, Matthew Gosden, Damien J. Downes, et al.
Nature Methods (2020) Vol. 17, Iss. 11, pp. 1118-1124
Open Access | Times Cited: 167
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 167
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
Elizabeth Ing‐Simmons, Roshan Vaid, Xinyang Bing, et al.
Nature Genetics (2021) Vol. 53, Iss. 4, pp. 487-499
Open Access | Times Cited: 135
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
Hongbo Li, Shenhao Wang, Sen Chai, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 126
How subtle changes in 3D structure can create large changes in transcription
Jordan Xiao, Antonina Hafner, Alistair N. Boettiger
eLife (2021) Vol. 10
Open Access | Times Cited: 123
Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes
Xiaotao Wang, Jie Xu, Baozhen Zhang, et al.
Nature Methods (2021) Vol. 18, Iss. 6, pp. 661-668
Open Access | Times Cited: 119
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions
Max Schubach, Thorben Maaß, Lusiné Nazaretyan, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. D1, pp. D1143-D1154
Open Access | Times Cited: 116
3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis
Xin Luo, Yuting Liu, Dachang Dang, et al.
Cell (2021) Vol. 184, Iss. 3, pp. 723-740.e21
Open Access | Times Cited: 110
Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing
Aditya Deshpande, Netha Ulahannan, Matthew Pendleton, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 10, pp. 1488-1499
Closed Access | Times Cited: 92
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