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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Probe-based bacterial single-cell RNA sequencing predicts toxin regulation
Ryan McNulty, Duluxan Sritharan, Seong Ho Pahng, et al.
Nature Microbiology (2023) Vol. 8, Iss. 5, pp. 934-945
Open Access | Times Cited: 65

Showing 1-25 of 65 citing articles:

Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq
Ziye Xu, Yuting Wang, Kuanwei Sheng, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 49
Co-transcriptional gene regulation in eukaryotes and prokaryotes
Morgan Shine, Jackson M. Gordon, Leonard Schärfen, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 25, Iss. 7, pp. 534-554
Closed Access | Times Cited: 23
Bacterial chromatin proteins, transcription, and DNA topology: Inseparable partners in the control of gene expression
Christine M. Hustmyer, Robert Landick
Molecular Microbiology (2024) Vol. 122, Iss. 1, pp. 81-112
Closed Access | Times Cited: 15
Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection
Bruce Wang, Aaron E. Lin, Jiayi Yuan, et al.
Nature Microbiology (2023) Vol. 8, Iss. 10, pp. 1846-1862
Open Access | Times Cited: 38
Understanding plant pathogen interactions using spatial and single-cell technologies
Jie Zhu, Alba Moreno‐Pérez, Gitta Coaker
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 23
Sequencing-based analysis of microbiomes
Yishay Pinto, Ami S. Bhatt
Nature Reviews Genetics (2024) Vol. 25, Iss. 12, pp. 829-845
Closed Access | Times Cited: 14
High-throughput single-microbe RNA sequencing reveals adaptive state heterogeneity and host-phage activity associations in human gut microbiome
Yifei Shen, Qinghong Qian, Li‐Guo Ding, et al.
Protein & Cell (2024) Vol. 16, Iss. 3, pp. 211-226
Open Access | Times Cited: 6
Bacterial single-cell RNA sequencing captures biofilm transcriptional heterogeneity and differential responses to immune pressure
Lee E. Korshoj, Tammy Kielian
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Exploring the transcriptional landscape of phage–host interactions using novel high-throughput approaches
Leena Putzeys, Laura Wicke, Ana Brandão, et al.
Current Opinion in Microbiology (2024) Vol. 77, pp. 102419-102419
Open Access | Times Cited: 4
CRISPRi functional genomics in bacteria and its application to medical and industrial research
Amy L. Enright, William J. Heelan, Ryan D. Ward, et al.
Microbiology and Molecular Biology Reviews (2024) Vol. 88, Iss. 2
Closed Access | Times Cited: 4
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 4
Droplet microfluidics: unveiling the hidden complexity of the human microbiome
Yibin Xu, Zhiyi Wang, Caiming Li, et al.
Lab on a Chip (2025)
Closed Access
Single-cell technology for disease-resistant plants
Lingaraj Dip, Akbar Hossain, Srikrushna Behera, et al.
Elsevier eBooks (2025), pp. 111-132
Closed Access
Highly multiplexed spatial transcriptomics in bacteria
Ari Sarfatis, Yuanyou Wang, Nana Twumasi-Ankrah, et al.
Science (2025) Vol. 387, Iss. 6732
Closed Access
Resolving spatiotemporal dynamics in bacterial multicellular populations: approaches and challenges
Suyen Espinoza Miranda, Gorkhmaz Abbaszade, Wolfgang R. Hess, et al.
Microbiology and Molecular Biology Reviews (2025)
Closed Access
Recent advances in single-cell RNA sequencing of Bacteria: Techniques, challenges, and applications
Mika Nishimura, Kazuki Takahashi, Masahito Hosokawa
Journal of Bioscience and Bioengineering (2025)
Closed Access
Bacterial colony biopsies: Spatial discrimination of heterogeneous cell types by cytometric fingerprinting
Gorkhmaz Abbaszade, Kathrin Stückrath, Susann Müller
Methods in Ecology and Evolution (2025)
Open Access
Highly Multiplexed Spatial Transcriptomics in Bacteria
Ari Sarfatis, Yuanyou Wang, Nana Twumasi-Ankrah, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 4
What’s in a name? Characteristics of clinical biofilms
Mads Lichtenberg, Tom Coenye, Matthew R. Parsek, et al.
FEMS Microbiology Reviews (2023) Vol. 47, Iss. 5
Open Access | Times Cited: 10
ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets
Prosenjit Samanta, Samuel F. Cooke, Ryan McNulty, et al.
Nature Protocols (2024) Vol. 19, Iss. 10, pp. 2939-2966
Closed Access | Times Cited: 3
High-throughput single-cell transcriptomics of bacteria using combinatorial barcoding
Karl D. Gaisser, Sophie N. Skloss, Leandra Brettner, et al.
Nature Protocols (2024)
Closed Access | Times Cited: 3
An Advanced Bacterial Single-cell RNA-seq Reveals Biofilm Heterogeneity
Xiaodan Yan, Hebin Liao, Chenyi Wang, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 3
Single-cell RNA sequencing reveals plasmid constrains bacterial population heterogeneity and identifies a non-conjugating subpopulation
Valentine Cyriaque, Rodrigo Ibarra‐Chávez, Anna Kuchina, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
Integrative genomics would strengthen AMR understanding through ONE health approach
Chinky Shiu Chen Liu, Rajesh Pandey
Heliyon (2024) Vol. 10, Iss. 14, pp. e34719-e34719
Open Access | Times Cited: 2
Hosts manipulate lifestyle switch and pathogenicity heterogeneity of opportunistic pathogens in the single-cell resolution
Ziguang Wang, Shuai Li, Sheng Zhang, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 2
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