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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
Daniel Kim, Andy Tran, Hani Jieun Kim, et al.
npj Systems Biology and Applications (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 33

Showing 1-25 of 33 citing articles:

Genetic Studies Through the Lens of Gene Networks
Marc Subirana-Granés, Jill A. Hoffman, Haoyu Zhang, et al.
Annual Review of Biomedical Data Science (2025)
Open Access | Times Cited: 1
Interpretable AI for inference of causal molecular relationships from omics data
Payam Dibaeinia, Abhishek Ojha, Saurabh Sinha
Science Advances (2025) Vol. 11, Iss. 7
Open Access | Times Cited: 1
The transcription factor Traffic jam orchestrates the somatic piRNA pathway in Drosophila ovaries
Azad Alizada, Aline Redondo Martins, Nolwenn Mouniée, et al.
Cell Reports (2025), pp. 115453-115453
Open Access | Times Cited: 1
Interpretable deep learning in single-cell omics
Manoj M Wagle, Siqu Long, Carissa Chen, et al.
Bioinformatics (2024) Vol. 40, Iss. 6
Open Access | Times Cited: 4
Single-cell technology for plant systems biology
Sahand Amini, Sandra Thibivilliers, Andrew Farmer, et al.
Elsevier eBooks (2025), pp. 133-156
Closed Access
Analysis of gene regulatory networks from gene expression using graph neural networks
Hakan T. Otal, Abdülhamit Subaşı, Furkan Kurt, et al.
Elsevier eBooks (2025), pp. 249-270
Closed Access
Inferring gene regulatory networks from time-series scRNA-seq data via GRANGER causal recurrent autoencoders
Liang Chen, Madison Dautle, Shuang Gao, et al.
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
Single-cell epigenetics and multiomics analysis in kidney research
Seishi Aihara, Yoshiharu Muto
Clinical and Experimental Nephrology (2025)
Open Access
Recent advances in exploring transcriptional regulatory landscape of crops
Qiang Huo, Rentao Song, Zeyang Ma
Frontiers in Plant Science (2024) Vol. 15
Open Access | Times Cited: 3
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
Jens Uwe Loers, Vanessa Vermeirssen
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 3
Artificial intelligence and machine learning applications for cultured meat
Michael E. Todhunter, Sheikh Jubair, Ruchika Verma, et al.
Frontiers in Artificial Intelligence (2024) Vol. 7
Open Access | Times Cited: 3
Passivity-based control and asymptotic synchronization for multi-variable discrete stochastic genetic regulatory networks with complex network dynamics
Shaobin Rao, Xiaojun Lv
The European Physical Journal Plus (2024) Vol. 139, Iss. 1
Closed Access | Times Cited: 2
Microplastics stimulated soil bacterial alpha diversity and nitrogen cycle: A global hierarchical meta-analysis
Mingyu Wang, Detian Li, Xiangyu Liu, et al.
Journal of Hazardous Materials (2024) Vol. 480, pp. 136043-136043
Open Access | Times Cited: 2
Discovering mechanisms of human genetic variation and controlling cell states at scale
M Frenkel, Srivatsan Raman
Trends in Genetics (2024) Vol. 40, Iss. 7, pp. 587-600
Open Access | Times Cited: 1
Inferring Gene Regulatory Networks of ALS from Blood Transcriptome Profiles
Xena Giada Pappalardo, Giorgio Jansen, Matteo N. Amaradio, et al.
Heliyon (2024) Vol. 10, Iss. 23, pp. e40696-e40696
Open Access | Times Cited: 1
Integrating Prior Knowledge Using Transformer for Gene Regulatory Network Inference
Guangzheng Weng, Patrick Martin, Hyobin Kim, et al.
Advanced Science (2024)
Closed Access | Times Cited: 1
Deciphering Plant Transcriptomes: Leveraging Machine Learning for Deeper Insights
Bahman Panahi, Rasmieh Hamid, Hossein Mohammad Zadeh Jalaly
Current Plant Biology (2024), pp. 100432-100432
Open Access | Times Cited: 1
Comparative gene regulatory network analysis in Alzheimer’s disease and major depressive disorder
Hanne Puype, Joke Deschildre, Vanessa Vermeirssen
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
OneSC: A computational platform for recapitulating cell state transitions
Da Peng, Patrick Cahan
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Single-cell pan-omics, environmental neurology, and artificial intelligence: the time for holistic brain health research
Paolo Abondio, Francesco Bruno
Neural Regeneration Research (2024) Vol. 20, Iss. 6, pp. 1703-1704
Open Access
The Regulatory Logic of Planarian Stem Cell Differentiation
Alberto Pérez-Posada, Helena García-Castro, Elena Emili, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Computational Analysis of Marker Genes in Alzheimer’s Disease across Multiple Brain Regions
Panagiotis Karanikolaos, Marios G. Krokidis, Themis P. Exarchos, et al.
Information (2024) Vol. 15, Iss. 9, pp. 523-523
Open Access
CSER: a gene regulatory network construction method based on causal strength and ensemble regression
Yujia Li, Yang Du, Mingmei Wang, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access
ScReNI: single-cell regulatory network inference through integrating scRNA-seq and scATAC-seq data
Xueli Xu, Yanran Liang, Miaoxiu Tang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Graph Theory and Definitions
S. Beretta, Riccardo Dondi
Elsevier eBooks (2024)
Closed Access
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