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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
Wei Liu, Ziye Wang, Ronghui You, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 17

Showing 17 citing articles:

Advancing protein structure prediction beyond AlphaFold2
Sung‐Joon Park, Sojung Myung, Minkyung Baek
Current Opinion in Structural Biology (2025) Vol. 90, pp. 102985-102985
Closed Access
Tandem repeats provide evidence for convergent evolution to similar protein structures
Erik S. Wright
Genome Biology and Evolution (2025)
Open Access
Major advances in protein function assignment by remote homolog detection with protein language models – A review
Mesih Kilinc, Kejue Jia, Robert L. Jernigan
Current Opinion in Structural Biology (2025) Vol. 90, pp. 102984-102984
Closed Access
Automated Engineering Protein Dynamics via Loop Grafting: Improving Renilla Luciferase Catalysis
Joan Planas-Iglesias, Marika Majerova, Daniel Pluskal, et al.
ACS Catalysis (2025), pp. 3391-3404
Closed Access
Predicting the bacterial host range of plasmid genomes using the language model-based one-class support vector machine algorithm
Tao Feng, X. G. Chen, Shu‐Fang Vivienne Wu, et al.
Microbial Genomics (2025) Vol. 11, Iss. 2
Open Access
Ai-enabled language models (LMs) to large language models (LLMs) and multimodal large language models (MLLMs) in drug discovery and development
Chiranjib Chakraborty, Manojit Bhattacharya, Soumen Pal, et al.
Journal of Advanced Research (2025)
Open Access
A large-scale assessment of sequence database search tools for homology-based protein function prediction
Chengxin Zhang, Lydia Freddolino
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 3
In the Twilight Zone of Protein Sequence Homology: Do Protein Language Models Learn Protein Structure?
Anowarul Kabir, Asher Moldwin, Yana Bromberg, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 1
The Historical Evolution and Significance of Multiple Sequence Alignment in Molecular Structure and Function Prediction
Chenyue Zhang, Qi Wang, Yiyang Li, et al.
Biomolecules (2024) Vol. 14, Iss. 12, pp. 1531-1531
Open Access | Times Cited: 1
Fast protein structure searching using structure graph embeddings
Joe G. Greener, Kiarash Jamali
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Closed Access | Times Cited: 9
NEAR: Neural Embeddings for Amino acid Relationships
Daniel R. Olson, Thomas Colligan, Daphne Demekas, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Genomic Hotspots: Localized chromosome gene expansions identify lineage-specific innovations as targets for functional biodiversity and predictions of stress resilience.
Eric Edsinger, Leonid L. Moroz
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Detection of circular permutations by Protein Language Models
Yue Hu, Bin Huang, Chongzhi Zang, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 27, pp. 214-220
Open Access
Advancing plant biology through deep learning-powered natural language processing
Shuang Peng, Loïc Rajjou
Plant Cell Reports (2024) Vol. 43, Iss. 8
Closed Access
Predicting the bacterial host range of plasmid genomes using the language model-based one-class SVM algorithm
Tao Feng, X. G. Chen, Shu‐Fang Vivienne Wu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Sequence-Order Frequency Matrix–Sampling and Machine Learning with Smith–Waterman (SOFM–SMSW) for Protein Remote Homology Detection
N. Sajithra, D. Ramyachitra, P. Manikandan
Wireless Personal Communications (2024) Vol. 138, Iss. 4, pp. 2637-2656
Closed Access
Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning
Jue Wang, Yufan Liu, Boxue Tian
Journal of Cheminformatics (2024) Vol. 16, Iss. 1
Open Access
Advancing plant single-cell genomics with foundation models
Tran N. Chau, Xuan Wang, John M. McDowell, et al.
Current Opinion in Plant Biology (2024) Vol. 82, pp. 102666-102666
Closed Access
Learning a generalized graph transformer for protein function prediction in dissimilar sequences
Yiwei Fu, Zhonghui Gu, Xiao Luo, et al.
GigaScience (2024) Vol. 13
Open Access
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