OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Spatial-linked alignment tool (SLAT) for aligning heterogenous slices
Chen‐Rui Xia, Zhi‐Jie Cao, Xinming Tu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 40
Chen‐Rui Xia, Zhi‐Jie Cao, Xinming Tu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 40
Showing 1-25 of 40 citing articles:
Spatiotemporal omics for biology and medicine
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 23
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 23
Spatiotemporal modeling of molecular holograms
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 15
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 15
Multi-slice spatial transcriptome domain analysis with SpaDo
Bin Duan, Shaoqi Chen, Xiaojie Cheng, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 11
Bin Duan, Shaoqi Chen, Xiaojie Cheng, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 11
Dissecting tumor microenvironment from spatially resolved transcriptomics data by heterogeneous graph learning
Chunman Zuo, Junjie Xia, Luonan Chen
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
Chunman Zuo, Junjie Xia, Luonan Chen
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
Navigating the landscapes of spatial transcriptomics: How computational methods guide the way
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 7
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 7
Spatial transcriptomics: a new frontier in cancer research
Siyuan Huang, Linkun Ouyang, Junjie Tang, et al.
Clinical Cancer Bulletin (2024) Vol. 3, Iss. 1
Open Access | Times Cited: 7
Siyuan Huang, Linkun Ouyang, Junjie Tang, et al.
Clinical Cancer Bulletin (2024) Vol. 3, Iss. 1
Open Access | Times Cited: 7
Computational methods for alignment and integration of spatially resolved transcriptomics data
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
Integrating Spatially‐Resolved Transcriptomics Data Across Tissues and Individuals: Challenges and Opportunities
Boyi Guo, Wodan Ling, Sang Ho Kwon, et al.
Small Methods (2025)
Open Access
Boyi Guo, Wodan Ling, Sang Ho Kwon, et al.
Small Methods (2025)
Open Access
Spatial Transcriptomics: Biotechnologies, Computational Tools, and Neuroscience Applications
Qianwen Wang, Hong-Yuan Zhu, Linhong Deng, et al.
Small Methods (2025)
Closed Access
Qianwen Wang, Hong-Yuan Zhu, Linhong Deng, et al.
Small Methods (2025)
Closed Access
DeST-OT: Alignment of spatiotemporal transcriptomics data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
Cell Systems (2025)
Closed Access
Peter Halmos, Xinhao Liu, Julian Gold, et al.
Cell Systems (2025)
Closed Access
Learning Phenotype Associated Signature in Spatial Transcriptomics with PASSAGE
C. Guo, Chen‐Rui Xia, Guangdun Peng, et al.
Small Methods (2025)
Open Access
C. Guo, Chen‐Rui Xia, Guangdun Peng, et al.
Small Methods (2025)
Open Access
Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Multiscale Dissection of Spatial Heterogeneity by Integrating Multi‐Slice Spatial and Single‐Cell Transcriptomics
Yuqi Chen, Caiwei Zhen, Yuanyuan Mo, et al.
Advanced Science (2025)
Open Access
Yuqi Chen, Caiwei Zhen, Yuanyuan Mo, et al.
Advanced Science (2025)
Open Access
AI-driven framework to map the brain metabolome in three dimensions
Xin Ma, Cameron J. Shedlock, Terrymar Medina, et al.
Nature Metabolism (2025)
Closed Access
Xin Ma, Cameron J. Shedlock, Terrymar Medina, et al.
Nature Metabolism (2025)
Closed Access
Integrating multiple spatial transcriptomics data using community-enhanced graph contrastive learning
Wei Tu, Lihua Zhang
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012948-e1012948
Open Access
Wei Tu, Lihua Zhang
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012948-e1012948
Open Access
A practical guide to spatial transcriptomics
Lukás Valihrach, Daniel Žucha, Pavel Abaffy, et al.
Molecular Aspects of Medicine (2024) Vol. 97, pp. 101276-101276
Closed Access | Times Cited: 4
Lukás Valihrach, Daniel Žucha, Pavel Abaffy, et al.
Molecular Aspects of Medicine (2024) Vol. 97, pp. 101276-101276
Closed Access | Times Cited: 4
Spatial omics advances for in situ RNA biology
Jingyi Ren, Shuchen Luo, Hailing Shi, et al.
Molecular Cell (2024)
Closed Access | Times Cited: 4
Jingyi Ren, Shuchen Luo, Hailing Shi, et al.
Molecular Cell (2024)
Closed Access | Times Cited: 4
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
Decoding the blueprints of embryo development with single-cell and spatial omics
Chang Liu, Xuerong Li, Qinan Hu, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 22-39
Open Access
Chang Liu, Xuerong Li, Qinan Hu, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 22-39
Open Access
Learning single-cell spatial context through integrated spatial multiomics with CORAL
Siyu He, Matthew F Bieniosek, Dongyuan Song, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Siyu He, Matthew F Bieniosek, Dongyuan Song, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Application of Spatial Omics in the Cardiovascular System
Yuhong Hu, Hao Jia, Hao Cui, et al.
Research (2025) Vol. 8
Open Access
Yuhong Hu, Hao Jia, Hao Cui, et al.
Research (2025) Vol. 8
Open Access
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
Kaitlin Stouffer, Alain Trouvé, Laurent Younès, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Kaitlin Stouffer, Alain Trouvé, Laurent Younès, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
SANTO: a coarse-to-fine alignment and stitching method for spatial omics
Haoyang Li, Yingxin Lin, Wenjia He, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Haoyang Li, Yingxin Lin, Wenjia He, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
VGAE-CCI: variational graph autoencoder-based construction of 3D spatial cell–cell communication network
Tianjiao Zhang, Xiang Zhang, Zhenao Wu, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access | Times Cited: 3
Tianjiao Zhang, Xiang Zhang, Zhenao Wu, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access | Times Cited: 3
