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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Evolutionary selection of proteins with two folds
Joseph W. Schafer, Lauren L. Porter
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

AlphaFold predictions of fold-switched conformations are driven by structure memorization
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 25
Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
Devlina Chakravarty, Myeongsang Lee, Lauren L. Porter
Current Opinion in Structural Biology (2025) Vol. 90, pp. 102973-102973
Open Access | Times Cited: 7
Metamorphic proteins and how to find them
Lauren L. Porter, Irina Artsimovitch, César A. Ramírez‐Sarmiento
Current Opinion in Structural Biology (2024) Vol. 86, pp. 102807-102807
Open Access | Times Cited: 14
Sequence clustering confounds AlphaFold2
Joseph W. Schafer, Devlina Chakravarty, Ethan A. Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 11
Sequence clustering confounds AlphaFold2
Joseph W. Schafer, Myeongsang Lee, Devlina Chakravarty, et al.
Nature (2025) Vol. 638, Iss. 8051, pp. E8-E12
Open Access | Times Cited: 1
AlphaFold2 has more to learn about protein energy landscapes
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 19
Distinguishing features of fold‐switching proteins
Devlina Chakravarty, Joseph W. Schafer, Lauren L. Porter
Protein Science (2023) Vol. 32, Iss. 3
Open Access | Times Cited: 16
Recent Advances and Challenges in Protein Structure Prediction
Chunxiang Peng, Liang Fang, Yuhao Xia, et al.
Journal of Chemical Information and Modeling (2023) Vol. 64, Iss. 1, pp. 76-95
Closed Access | Times Cited: 16
Integration of a Randomized Sequence Scanning Approach in AlphaFold2 and Local Frustration Profiling of Conformational States Enable Interpretable Atomistic Characterization of Conformational Ensembles and Detection of Hidden Allosteric States in the ABL1 Protein Kinase
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 12, pp. 5317-5336
Closed Access | Times Cited: 6
ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster
Lauren L. Porter, Devlina Chakravarty, Joseph W. Schafer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Fluid protein fold space and its implications
Lauren L. Porter
BioEssays (2023) Vol. 45, Iss. 9
Open Access | Times Cited: 13
Interpretable Atomistic Prediction and Functional Analysis of Conformational Ensembles and Allosteric States in Protein Kinases Using AlphaFold2 Adaptation with Randomized Sequence Scanning and Local Frustration Profiling
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
SSDraw: Software for generating comparative protein secondary structure diagrams
Ethan A. Chen, Lauren L. Porter
Protein Science (2023) Vol. 32, Iss. 12
Open Access | Times Cited: 11
Enthalpy driven temperature-sensitive conformational changes in a metamorphic protein involved in the cyanobacterial circadian clock
Beihai Ma, Zengxin Ma, Ning Zhang
International Journal of Biological Macromolecules (2025), pp. 140360-140360
Closed Access
Evolving concepts of the protein universe
Prakash Kulkarni, Lauren Porter, Tsui‐Fen Chou, et al.
iScience (2025) Vol. 28, Iss. 3, pp. 112012-112012
Open Access
AlphaFold2's training set powers its predictions of some fold‐switched conformations
Joseph W. Schafer, Lauren L. Porter
Protein Science (2025) Vol. 34, Iss. 4
Open Access
Emerging frontiers in protein structure prediction following the AlphaFold revolution
Martin L. Rennie, Michael R. Oliver
Journal of The Royal Society Interface (2025) Vol. 22, Iss. 225
Open Access
A Reversible Spherical Geometric Conversion of Protein Backbone Structure Coordinate Matrix to Three Independent Vectors of ρ, θ and φ
Wei Li
(2024)
Open Access | Times Cited: 3
Proteomic evidence for amyloidogenic cross-seeding in fibrinaloid microclots
Douglas B. Kell, Etheresia Pretorius
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
Protein Fold Usages in Ribosomes: Another Glance to the Past
Inzhu Tanoz, Youri Timsit
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 16, pp. 8806-8806
Open Access | Times Cited: 2
A contact‐based analysis of local energetic frustration dynamics identifies key residues enabling RfaH fold‐switch
Jorge González‐Higueras, María I. Freiberger, Pablo Galaz‐Davison, et al.
Protein Science (2024) Vol. 33, Iss. 10
Closed Access | Times Cited: 2
Metamorphic protein folding as evolutionary adaptation
Acacia F. Dishman, Brian F. Volkman
Trends in Biochemical Sciences (2023) Vol. 48, Iss. 8, pp. 665-672
Open Access | Times Cited: 5
Assessing AF2’s ability to predict structural ensembles of proteins
Jakob R. Riccabona, Fabian C. Spoendlin, Anna-Lena M. Fischer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
AlphaFold2knowssome protein folding principles
Liwei Chang, Alberto Pérez
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Assessing AF2’s ability to predict structural ensembles of proteins
Jakob R. Riccabona, Fabian C. Spoendlin, Anna-Lena M. Fischer, et al.
Structure (2024)
Closed Access | Times Cited: 1
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