OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform
Fengchao Yu, Guo Ci Teo, Andy T. Kong, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 98
Fengchao Yu, Guo Ci Teo, Andy T. Kong, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 98
Showing 1-25 of 98 citing articles:
Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition
Ulises H. Guzmán, Ana Martínez-Val, Zilu Ye, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 89
Ulises H. Guzmán, Ana Martínez-Val, Zilu Ye, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 89
MSBooster: improving peptide identification rates using deep learning-based features
Kevin Yang, Fengchao Yu, Guo Ci Teo, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 82
Kevin Yang, Fengchao Yu, Guo Ci Teo, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 82
MS-Based Proteomics of Body Fluids: The End of the Beginning
Jakob M. Bader, Vincent Albrecht, Matthias Mann
Molecular & Cellular Proteomics (2023) Vol. 22, Iss. 7, pp. 100577-100577
Open Access | Times Cited: 58
Jakob M. Bader, Vincent Albrecht, Matthias Mann
Molecular & Cellular Proteomics (2023) Vol. 22, Iss. 7, pp. 100577-100577
Open Access | Times Cited: 58
Elucidating the cellular determinants of targeted membrane protein degradation by lysosome-targeting chimeras
Green Ahn, Nicholas M. Riley, Roarke A. Kamber, et al.
Science (2023) Vol. 382, Iss. 6668
Open Access | Times Cited: 50
Green Ahn, Nicholas M. Riley, Roarke A. Kamber, et al.
Science (2023) Vol. 382, Iss. 6668
Open Access | Times Cited: 50
Acquisition and Analysis of DIA-Based Proteomic Data: A Comprehensive Survey in 2023
Ronghui Lou, Wenqing Shui
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 2, pp. 100712-100712
Open Access | Times Cited: 32
Ronghui Lou, Wenqing Shui
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 2, pp. 100712-100712
Open Access | Times Cited: 32
Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides
Humberto J. Ferreira, Brian J. Stevenson, HuiSong Pak, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
Humberto J. Ferreira, Brian J. Stevenson, HuiSong Pak, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
Analysis and visualization of quantitative proteomics data using FragPipe-Analyst
Yi Hsiao, Haijian Zhang, Ginny Xiaohe Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 11
Yi Hsiao, Haijian Zhang, Ginny Xiaohe Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 11
Proteomics of the heart
Oleg A. Karpov, Aleksandr Stotland, Koen Raedschelders, et al.
Physiological Reviews (2024) Vol. 104, Iss. 3, pp. 931-982
Open Access | Times Cited: 10
Oleg A. Karpov, Aleksandr Stotland, Koen Raedschelders, et al.
Physiological Reviews (2024) Vol. 104, Iss. 3, pp. 931-982
Open Access | Times Cited: 10
CURTAIN—A unique web-based tool for exploration and sharing of MS-based proteomics data
Toan K. Phung, Kerryn Berndsen, R. Shastry, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 7
Open Access | Times Cited: 9
Toan K. Phung, Kerryn Berndsen, R. Shastry, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 7
Open Access | Times Cited: 9
Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst
Yi Hsiao, Haijian Zhang, Ginny Xiaohe Li, et al.
Journal of Proteome Research (2024)
Closed Access | Times Cited: 9
Yi Hsiao, Haijian Zhang, Ginny Xiaohe Li, et al.
Journal of Proteome Research (2024)
Closed Access | Times Cited: 9
Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment
Bo Wen, Jack Freestone, Michael Riffle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Bo Wen, Jack Freestone, Michael Riffle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Single‐cell proteomics by mass spectrometry: Advances and implications in cancer research
Yong Chiang Tan, Teck Yew Low, Pey Yee Lee, et al.
PROTEOMICS (2024) Vol. 24, Iss. 12-13
Closed Access | Times Cited: 7
Yong Chiang Tan, Teck Yew Low, Pey Yee Lee, et al.
PROTEOMICS (2024) Vol. 24, Iss. 12-13
Closed Access | Times Cited: 7
Data-Independent Acquisition: A Milestone and Prospect in Clinical Mass Spectrometry–Based Proteomics
Klemens Fröhlich, Matthias Fahrner, Eva Brombacher, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 8, pp. 100800-100800
Open Access | Times Cited: 7
Klemens Fröhlich, Matthias Fahrner, Eva Brombacher, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 8, pp. 100800-100800
Open Access | Times Cited: 7
Optimizing differential expression analysis for proteomics data via high-performing rules and ensemble inference
Hui Peng, He Wang, Weijia Kong, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Hui Peng, He Wang, Weijia Kong, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors into Peptide Identification
Mostafa Kalhor, Joel Lapin, Mario Picciani, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 7, pp. 100798-100798
Open Access | Times Cited: 6
Mostafa Kalhor, Joel Lapin, Mario Picciani, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 7, pp. 100798-100798
Open Access | Times Cited: 6
Characterization of a lipid-based jumbo phage compartment as a hub for early phage infection
Deepto Mozumdar, Andrea Fossati, Erica Stevenson, et al.
Cell Host & Microbe (2024) Vol. 32, Iss. 7, pp. 1050-1058.e7
Closed Access | Times Cited: 6
Deepto Mozumdar, Andrea Fossati, Erica Stevenson, et al.
Cell Host & Microbe (2024) Vol. 32, Iss. 7, pp. 1050-1058.e7
Closed Access | Times Cited: 6
diaTracer enables spectrum-centric analysis of diaPASEF proteomics data
Kai Li, Guo Ci Teo, Kevin Yang, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Kai Li, Guo Ci Teo, Kevin Yang, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Spaceflight alters protein levels and gene expression associated with stress response and metabolic characteristics in human cardiac spheroids
Parvin Forghani, Wenhao Liu, Zeyu Wang, et al.
Biomaterials (2025) Vol. 317, pp. 123080-123080
Closed Access
Parvin Forghani, Wenhao Liu, Zeyu Wang, et al.
Biomaterials (2025) Vol. 317, pp. 123080-123080
Closed Access
Integrated View of Baseline Protein Expression in Human Tissues Using Public Data Independent Acquisition Data Sets
Ananth Prakash, Andrew Collins, Liora Haim-Vilmovsky, et al.
Journal of Proteome Research (2025) Vol. 24, Iss. 2, pp. 685-695
Open Access
Ananth Prakash, Andrew Collins, Liora Haim-Vilmovsky, et al.
Journal of Proteome Research (2025) Vol. 24, Iss. 2, pp. 685-695
Open Access
Circadian Proteomics Reassesses the Temporal Regulation of Metabolic Rhythms by Chlamydomonas Clock
Dinesh Balasaheb Jadhav, Sougata Roy
Plant Cell & Environment (2025)
Closed Access
Dinesh Balasaheb Jadhav, Sougata Roy
Plant Cell & Environment (2025)
Closed Access
AMPylation regulates PLD3 processing.
Lutz Hoffmann, Eva-Maria Eckl, Marleen Bérouti, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Lutz Hoffmann, Eva-Maria Eckl, Marleen Bérouti, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
A multi-tissue longitudinal proteomics study to evaluate the suitability of post-mortem samples for pathophysiological research
Christian M. Beusch, Ken Braesch-Andersen, Ulrika Felldin, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Christian M. Beusch, Ken Braesch-Andersen, Ulrika Felldin, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Gel-Based Sample Fractionation with SP3-Purification for Top-Down Proteomics
Ayako Takemori, Naoyuki Sugiyama, Jake Kline, et al.
Journal of Proteome Research (2025) Vol. 24, Iss. 2, pp. 850-860
Closed Access
Ayako Takemori, Naoyuki Sugiyama, Jake Kline, et al.
Journal of Proteome Research (2025) Vol. 24, Iss. 2, pp. 850-860
Closed Access
Global cellular proteo-lipidomic profiling of diverse lysosomal storage disease mutants using nMOST
Felix Kraus, Yuchen He, Sharan Swarup, et al.
Science Advances (2025) Vol. 11, Iss. 4
Open Access
Felix Kraus, Yuchen He, Sharan Swarup, et al.
Science Advances (2025) Vol. 11, Iss. 4
Open Access
prolfquapp ─ A User-Friendly Command-Line Tool Simplifying Differential Expression Analysis in Quantitative Proteomics
Witold Wolski, Jonas Grossmann, Leonardo Schwarz, et al.
Journal of Proteome Research (2025)
Open Access
Witold Wolski, Jonas Grossmann, Leonardo Schwarz, et al.
Journal of Proteome Research (2025)
Open Access
