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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis
Yanshuo Chen, Yixuan Wang, Yuelong Chen, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 52

Showing 1-25 of 52 citing articles:

Hypoxia coordinates the spatial landscape of myeloid cells within glioblastoma to affect survival
Michael Haley, Leoma Bere, James Minshull, et al.
Science Advances (2024) Vol. 10, Iss. 20
Open Access | Times Cited: 16
OmicVerse: a framework for bridging and deepening insights across bulk and single-cell sequencing
Zehua Zeng, Yuqing Ma, Lei Hu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
A review on advancements in feature selection and feature extraction for high-dimensional NGS data analysis
Kasmika Borah, Himanish Shekhar Das, Soumita Seth, et al.
Functional & Integrative Genomics (2024) Vol. 24, Iss. 5
Closed Access | Times Cited: 12
Multi-omic profiling highlights factors associated with resistance to immuno-chemotherapy in non-small-cell lung cancer
Yilv Yan, Dongqing Sun, Junjie Hu, et al.
Nature Genetics (2024)
Closed Access | Times Cited: 7
Heterogeneous pseudobulk simulation enables realistic benchmarking of cell-type deconvolution methods
Mengying Hu, Maria Chikina
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 6
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 5
DISSECT: deep semi-supervised consistency regularization for accurate cell type fraction and gene expression estimation
Robin Khatri, Pierre Machart, Stefan Bonn
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Progress of single-cell RNA sequencing combined with spatial transcriptomics in tumour microenvironment and treatment of pancreatic cancer
Jie Zhu, Ke Zhang, Chen Yuan, et al.
Journal of Translational Medicine (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 4
Interpretable deep learning in single-cell omics
Manoj M Wagle, Siqu Long, Carissa Chen, et al.
Bioinformatics (2024) Vol. 40, Iss. 6
Open Access | Times Cited: 4
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
High-resolution digital dissociation of brain tumors with deep multimodal autoencoder
Jiao Sun, Yue Pan, Tong Lin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Decoding maize meristems maintenance and differentiation: integrating single-cell and spatial omics
Bin Li, Wenhao Liu, Jie Xu, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2025)
Closed Access
OmicVerse: A single pipeline for exploring the entire transcriptome universe
Zehua Zeng, Yuqing Ma, Lei Hu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Revealing myopathy spectrum: integrating transcriptional and clinical features of human skeletal muscles with varying health conditions
Huahua Zhong, Veronica Sian, Mridul Johari, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 3
imply: improving cell-type deconvolution accuracy using personalized reference profiles
Guanqun Meng, Yue Pan, Wen Tang, et al.
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 3
scSemiProfiler: Advancing large-scale single-cell studies through semi-profiling with deep generative models and active learning
Jingtao Wang, Gregory J. Fonseca, Jun Ding
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
scDOT: optimal transport for mapping senescent cells in spatial transcriptomics
Nam D. Nguyen, Lorena Rosas, Timur O. Khaliullin, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Cell-type deconvolution of bulk-blood RNA-seq reveals biological insights into neuropsychiatric disorders
Toni Boltz, Tommer Schwarz, Merel Bot, et al.
The American Journal of Human Genetics (2024) Vol. 111, Iss. 2, pp. 323-337
Open Access | Times Cited: 1
Pathway-enhanced Transformer-based robust model for quantifying cell types of origin of cell-free transcriptome
Shuo Yan, Xuetao Tian, Yulong Qin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
scNovel: a scalable deep learning-based network for novel rare cell discovery in single-cell transcriptomics
Chuanyang Zheng, Yixuan Wang, Yuqi Cheng, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 1
Multimodal joint deconvolution and integrative signature selection in proteomics
Yue Pan, Xusheng Wang, Jiao Sun, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 1
Assessing next-generation sequencing-based computational methods for predicting transcriptional regulators with query gene sets
Zeyu Lu, Xue Xiao, Qiang Zheng, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 1
Optimal transport for mapping senescent cells in spatial transcriptomics
Nam D. Nguyen, Lorena Rosas, Timur O. Khaliullin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Deconer: A comprehensive and systematic evaluation toolkit for reference-based cell type deconvolution algorithms using gene expression data
Wei Zhang, Xianglin Zhang, Qiao Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
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