Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
Shaojun Pan, Chengkai Zhu, Xing‐Ming Zhao, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 89

Showing 1-25 of 89 citing articles:

Microbes to support plant health: understanding bioinoculant success in complex conditions
Sanne WM Poppeliers, Juan J. Sánchez-Gil, Ronnie de Jonge
Current Opinion in Microbiology (2023) Vol. 73, pp. 102286-102286
Open Access | Times Cited: 56
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing
Shaojun Pan, Xing‐Ming Zhao, Luís Pedro Coelho
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i21-i29
Open Access | Times Cited: 46
SingleM and Sandpiper: Robust microbial taxonomic profiles from metagenomic data
Ben J. Woodcroft, Samuel T. N. Aroney, Rossen Zhao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 40
Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning
Jingyue Wu, Stephanie S. Singleton, Urnisha Bhuiyan, et al.
Frontiers in Molecular Biosciences (2024) Vol. 10
Open Access | Times Cited: 21
Effective binning of metagenomic contigs using contrastive multi-view representation learning
Ziye Wang, Ronghui You, Haitao Han, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
A metagenomic perspective on the microbial prokaryotic genome census
Dongying Wu, R. Seshadri, Nikos C. Kyrpides, et al.
Science Advances (2025) Vol. 11, Iss. 3
Open Access | Times Cited: 4
Machine learning for data integration in human gut microbiome
Peishun Li, Hao Luo, Boyang Ji, et al.
Microbial Cell Factories (2022) Vol. 21, Iss. 1
Open Access | Times Cited: 53
Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse
Cunyuan Li, Xiaoyue Li, Rongjun Guo, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 25
Genome-resolved metagenomics: a game changer for microbiome medicine
Nayeon Kim, Junyeong Ma, Wonjong Kim, et al.
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 7, pp. 1501-1512
Open Access | Times Cited: 14
Nitrate-driven anaerobic oxidation of ethane and butane by bacteria
Mengxiong Wu, Jie Li, Chun-Yu Lai, et al.
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 10
SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models
Salvatore Cosentino, Sira Sriswasdi, Wataru Iwasaki
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 10
Ammonium-Enhanced Arsenic Mobilization from Aquifer Sediments
Wei Xiu, Ruixuan Gai, Songze Chen, et al.
Environmental Science & Technology (2024)
Closed Access | Times Cited: 8
Deep learning methods in metagenomics: a review
Gaspar Roy, Edi Prifti, Eugeni Belda, et al.
Microbial Genomics (2024) Vol. 10, Iss. 4
Open Access | Times Cited: 8
Risk assessment and dissemination mechanism of antibiotic resistance genes in compost
Yifei Xu, Lin Zhu, Shanguo Chen, et al.
Environment International (2023) Vol. 178, pp. 108126-108126
Open Access | Times Cited: 17
Enhancing Multimodal Patterns in Neuroimaging by Siamese Neural Networks with Self-Attention Mechanism
Juan E. Arco, Andrés Ortíz, Nicolás J. Gallego-Molina, et al.
International Journal of Neural Systems (2023) Vol. 33, Iss. 04
Open Access | Times Cited: 16
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, et al.
Microbial Biotechnology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 7
Identifying Eukaryotes and Factors Influencing Their Biogeography in Drinking Water Metagenomes
Marco Gabrielli, Zihan Dai, Vincent Delafont, et al.
Environmental Science & Technology (2023) Vol. 57, Iss. 9, pp. 3645-3660
Open Access | Times Cited: 14
Adversarial and variational autoencoders improve metagenomic binning
Pau Piera Líndez, Joachim Johansen, Svetlana Kutuzova, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 14
Artificial Intelligence: A Promising Tool in Exploring the Phytomicrobiome in Managing Disease and Promoting Plant Health
Liang Zhao, Sean Walkowiak, W. G. Dilantha Fernando
Plants (2023) Vol. 12, Iss. 9, pp. 1852-1852
Open Access | Times Cited: 13
Modeling Microbial Communities: Perspective and Challenges
Lavanya Raajaraam, Karthik Raman
ACS Synthetic Biology (2024) Vol. 13, Iss. 8, pp. 2260-2270
Open Access | Times Cited: 5
Metagenomics reveals spatial variation in cyanobacterial composition, function, and biosynthetic potential in the Winam Gulf, Lake Victoria, Kenya
Lauren Hart, Brittany N. Zepernick, Kaela E. Natwora, et al.
Applied and Environmental Microbiology (2025)
Open Access
Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome
Nicholas Pucci, Joanne Ujčič-Voortman, Arnoud P. Verhoeff, et al.
PeerJ (2025) Vol. 13, pp. e18602-e18602
Open Access
Deep learning in microbiome analysis: a comprehensive review of neural network models
Piotr Przymus, Krzysztof Rykaczewski, Adrián Martín‐Segura, et al.
Frontiers in Microbiology (2025) Vol. 15
Open Access
Viruses Facilitate Energy Acquisition Potential by Their Bacterial Hosts in Rhizosphere of Grafted Plants
He Zhang, Yang Ruan, Yakov Kuzyakov, et al.
Plant Cell & Environment (2025)
Closed Access
Page 1 - Next Page

Scroll to top