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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations
Jingxuan Zhu, Juexin Wang, Weiwei Han, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 78

Showing 1-25 of 78 citing articles:

DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants
K. Wang, Muhammad Abid, Awais Rasheed, et al.
Molecular Plant (2022) Vol. 16, Iss. 1, pp. 279-293
Open Access | Times Cited: 102
Opportunities and Challenges for Machine Learning-Assisted Enzyme Engineering
Jason Yang, Francesca-Zhoufan Li, Frances H. Arnold
ACS Central Science (2024) Vol. 10, Iss. 2, pp. 226-241
Open Access | Times Cited: 67
Atomic surface achieved through a novel cross-scale model from macroscale to nanoscale
Feng Zhao, Zhenyu Zhang, Xingqiao Deng, et al.
Nanoscale (2024) Vol. 16, Iss. 5, pp. 2318-2336
Closed Access | Times Cited: 22
Protein dynamics underlying allosteric regulation
Miro A. Astore, Akshada S. Pradhan, Erik H. Thiede, et al.
Current Opinion in Structural Biology (2024) Vol. 84, pp. 102768-102768
Open Access | Times Cited: 19
Machine learning approaches in predicting allosteric sites
Francho Nerín-Fonz, Zoe Cournia
Current Opinion in Structural Biology (2024) Vol. 85, pp. 102774-102774
Open Access | Times Cited: 18
Using deep learning and molecular dynamics simulations to unravel the regulation mechanism of peptides as noncompetitive inhibitor of xanthine oxidase
Yi He, Kaifeng Liu, Fuyan Cao, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 16
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
Bin Huang, Lupeng Kong, Chao Wang, et al.
Genomics Proteomics & Bioinformatics (2023) Vol. 21, Iss. 5, pp. 913-925
Open Access | Times Cited: 31
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader
Kailong Zhao, Yuhao Xia, Fujin Zhang, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 30
Exploring and Learning the Universe of Protein Allostery Using Artificial Intelligence Augmented Biophysical and Computational Approaches
Steve Agajanian, Mohammed Alshahrani, Fang Bai, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 5, pp. 1413-1428
Closed Access | Times Cited: 23
Accelerating therapeutic protein design with computational approaches toward the clinical stage
Zhidong Chen, Xinpei Wang, Xu Chen, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2909-2926
Open Access | Times Cited: 22
A comprehensive survey on protein-ligand binding site prediction
Ying Xia, Xiaoyong Pan, Hong‐Bin Shen
Current Opinion in Structural Biology (2024) Vol. 86, pp. 102793-102793
Closed Access | Times Cited: 9
Deciphering allosteric mechanisms in KRAS activation: insights from GTP-induced conformational dynamics and interaction network reorganization
Dongmei Zhao, Jingyu Yang, Meng-Ting Liu, et al.
RSC Advances (2025) Vol. 15, Iss. 3, pp. 2261-2274
Open Access | Times Cited: 1
Information-based Gradient enhanced Causal Learning Graph Neural Network for fault diagnosis of complex industrial processes
Ruonan Liu, Yunfei Xie, Di Lin, et al.
Reliability Engineering & System Safety (2024) Vol. 252, pp. 110468-110468
Closed Access | Times Cited: 6
Protein Function Analysis through Machine Learning
Chris Avery, John A. Patterson, Tyler Grear, et al.
Biomolecules (2022) Vol. 12, Iss. 9, pp. 1246-1246
Open Access | Times Cited: 20
Machine learning and protein allostery
Sian Xiao, Gennady M. Verkhivker, Peng Tao
Trends in Biochemical Sciences (2022) Vol. 48, Iss. 4, pp. 375-390
Open Access | Times Cited: 20
From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on “Allosteric Intersection” of Biochemical and Big Data Approaches
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 9, pp. 7747-7747
Open Access | Times Cited: 11
New Insights into the Cooperativity and Dynamics of Dimeric Enzymes
Ke-Wei Chen, Tian‐Yu Sun, Yun‐Dong Wu
Chemical Reviews (2023) Vol. 123, Iss. 16, pp. 9940-9981
Closed Access | Times Cited: 11
NRIMD, a Web Server for Analyzing Protein Allosteric Interactions Based on Molecular Dynamics Simulation
Yi He, Shuang Wang, Shuai Zeng, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 19, pp. 7176-7183
Closed Access | Times Cited: 4
The structural biology and dynamics of malate dehydrogenases
Christopher Berndsen, Jessica K. Bell
Essays in Biochemistry (2024) Vol. 68, Iss. 2, pp. 57-72
Closed Access | Times Cited: 4
AI-integrated network for RNA complex structure and dynamic prediction
Haoquan Liu, Zhuo Chen, Jiaming Gao, et al.
Biophysics Reviews (2024) Vol. 5, Iss. 4
Closed Access | Times Cited: 4
An interaction relational inference method for a coal-mining equipment system
Xiangang Cao, Jiajun Gao, Xin Yang, et al.
Complex & Intelligent Systems (2025) Vol. 11, Iss. 1
Open Access
The Evolving Landscape of Protein Allostery: From Computational and Experimental Perspectives
E. Srinivasan, Grigor Arakelov, Nikolay V. Dokholyan
Journal of Molecular Biology (2025), pp. 169060-169060
Closed Access
Masked graph autoencoder-based multi-agent dynamic relational inference model for trajectory prediction
Fuyuan Zhao, Xiangang Cao, Jiangbin Zhao, et al.
Neurocomputing (2025), pp. 129922-129922
Closed Access
Antibacterial Potential of Trichoderma Bioactive Metabolites in Managing Staphylococcus aureus Infection: Integrated Molecular Modeling Approaches
Gourav Choudhir, Israil, Faiza Iram, et al.
Aspects of Molecular Medicine (2025), pp. 100076-100076
Open Access
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