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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Stripenn detects architectural stripes from chromatin conformation data using computer vision
Sora Yoon, Aditi Chandra, Golnaz Vahedi
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 47

Showing 1-25 of 47 citing articles:

BRD4 orchestrates genome folding to promote neural crest differentiation
Ricardo Linares-Saldana, Wonho Kim, Nikhita Bolar, et al.
Nature Genetics (2021) Vol. 53, Iss. 10, pp. 1480-1492
Open Access | Times Cited: 67
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors
Wenliang Wang, Aditi Chandra, Naomi Goldman, et al.
Nature Immunology (2022) Vol. 23, Iss. 7, pp. 1052-1062
Open Access | Times Cited: 64
CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity
Yu Liu, Job Dekker
Nature Cell Biology (2022) Vol. 24, Iss. 10, pp. 1516-1527
Open Access | Times Cited: 48
Computational methods for analysing multiscale 3D genome organization
Yang Zhang, Lorenzo Boninsegna, Muyu Yang, et al.
Nature Reviews Genetics (2023) Vol. 25, Iss. 2, pp. 123-141
Open Access | Times Cited: 34
High-throughput Oligopaint screen identifies druggable 3D genome regulators
Daniel Park, Son C. Nguyen, Randi Isenhart, et al.
Nature (2023) Vol. 620, Iss. 7972, pp. 209-217
Closed Access | Times Cited: 30
Cis-regulatory chromatin contacts form de novo in the absence of loop extrusion
Nicholas Aboreden, Han Zhao, Fengnian Shan, et al.
(2025)
Open Access | Times Cited: 1
The glucocorticoid receptor associates with the cohesin loader NIPBL to promote long-range gene regulation
Lorenzo Rinaldi, Grégory Fettweis, Sohyoung Kim, et al.
Science Advances (2022) Vol. 8, Iss. 13
Open Access | Times Cited: 37
Quantitative control of Ets1 dosage by a multi-enhancer hub promotes Th1 cell differentiation and protects from allergic inflammation
Aditi Chandra, Sora Yoon, Michaël F. Michieletto, et al.
Immunity (2023) Vol. 56, Iss. 7, pp. 1451-1467.e12
Open Access | Times Cited: 16
Recipes and ingredients for deep learning models of 3D genome folding
Paulina N. Smaruj, Yao Xiao, Geoffrey Fudenberg
Current Opinion in Genetics & Development (2025) Vol. 91, pp. 102308-102308
Open Access
Memory CD4+ T cells sequentially restructure their 3D genome during stepwise activation
Alexander I. Ward, Jose I. de las Heras, Eric C. Schirmer, et al.
Frontiers in Cell and Developmental Biology (2025) Vol. 13
Open Access
Context-Dependent and Gene-Specific Role of Chromatin Architecture Mediated by Histone Modifiers and Loop-extrusion Machinery
Melodi Tastemel, Adam Jussila, Bharath Saravanan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Significance in scale space for Hi-C data
Rui Liu, Zhengwu Zhang, Hyejung Won, et al.
Bioinformatics (2025) Vol. 41, Iss. 3
Open Access
Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation
Michaël F. Michieletto, John James Tello Cajiao, Walter K. Mowel, et al.
Nature Immunology (2022) Vol. 24, Iss. 1, pp. 42-54
Open Access | Times Cited: 19
Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes
Karolina Jodkowska, Zofia Parteka, Abhishek Agarwal, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data
Andrea Raffo, Jonas Paulsen
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 8
Dynamic chromatin architecture identifies new autoimmune-associated enhancers for IL2 and novel genes regulating CD4+ T cell activation
Matthew C. Pahl, Prabhat Sharma, Rajan M. Thomas, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 2
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions
Roberto Rossini, Vipin Kumar, Anthony Mathelier, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 11
snHiC: a complete and simplified snakemake pipeline for grouped Hi-C data analysis
Sebastian Gregoricchio, Wilbert Zwart
Bioinformatics Advances (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 5
DNA methylation insulates genic regions from CTCF loops near nuclear speckles
Shelby A. Roseman, Allison P. Siegenfeld, Ceejay Lee, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Dual-band real-time object identification via polarization reversal based on 2D GeSe image sensor
Yali Yu, Tao Xiong, Jun Kang, et al.
Science Bulletin (2023) Vol. 68, Iss. 17, pp. 1867-1870
Open Access | Times Cited: 4
EXPRESSO: a multi-omics database to explore multi-layered 3D genomic organization
Liuyang Cai, Jun Qiao, Ruixin Zhou, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D79-D90
Open Access | Times Cited: 1
GILoop: Robust chromatin loop calling across multiple sequencing depths on Hi-C data
Fuzhou Wang, Tingxiao Gao, Jiecong Lin, et al.
iScience (2022) Vol. 25, Iss. 12, pp. 105535-105535
Open Access | Times Cited: 7
BRWD1 orchestrates small pre-B cell chromatin topology by converting static to dynamic cohesin
Malay Mandal, Mark Maienschein‐Cline, Yeguang Hu, et al.
Nature Immunology (2023) Vol. 25, Iss. 1, pp. 129-141
Closed Access | Times Cited: 3
VCMalloc: A Virtually Contiguous Memory Allocator
Yacine Hadjadj, Chakib Mustapha Anouar Zouaoui, Nasreddine Taleb, et al.
IEEE Transactions on Computers (2023) Vol. 72, Iss. 12, pp. 3431-3442
Closed Access | Times Cited: 2
StripeDiff: Model-based algorithm for differential analysis of chromatin stripe
Krishan Gupta, Guangyu Wang, Shuo Zhang, et al.
Science Advances (2022) Vol. 8, Iss. 49
Open Access | Times Cited: 4
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