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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
Helena L. Crowell, Charlotte Soneson, Pierre‐Luc Germain, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 304

Showing 1-25 of 304 citing articles:

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Kristen R. Maynard, Leonardo Collado‐Torres, Lukas M. Weber, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 3, pp. 425-436
Open Access | Times Cited: 710
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita, Aaron T. L. Lun, Étienne Becht, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 137-145
Open Access | Times Cited: 697
Confronting false discoveries in single-cell differential expression
Jordan W. Squair, Matthieu Gautier, Claudia Kathe, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 564
Dysregulation of brain and choroid plexus cell types in severe COVID-19
Andrew C. Yang, Fabian Kern, Patricia Morán Losada, et al.
Nature (2021) Vol. 595, Iss. 7868, pp. 565-571
Open Access | Times Cited: 511
Neuroinflammatory astrocyte subtypes in the mouse brain
Philip Hasel, Indigo V.L. Rose, Jessica S. Sadick, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 10, pp. 1475-1487
Closed Access | Times Cited: 399
Comparison and evaluation of statistical error models for scRNA-seq
Saket Choudhary, Rahul Satija
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 315
An integrated cell atlas of the lung in health and disease
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel Strobl, et al.
Nature Medicine (2023) Vol. 29, Iss. 6, pp. 1563-1577
Open Access | Times Cited: 308
Dissection of artifactual and confounding glial signatures by single-cell sequencing of mouse and human brain
Samuel E. Marsh, Alec J. Walker, Tushar Kamath, et al.
Nature Neuroscience (2022) Vol. 25, Iss. 3, pp. 306-316
Open Access | Times Cited: 255
Astrocytes and oligodendrocytes undergo subtype-specific transcriptional changes in Alzheimer’s disease
Jessica S. Sadick, Michael R. O’Dea, Philip Hasel, et al.
Neuron (2022) Vol. 110, Iss. 11, pp. 1788-1805.e10
Open Access | Times Cited: 228
The triumphs and limitations of computational methods for scRNA-seq
Peter V. Kharchenko
Nature Methods (2021) Vol. 18, Iss. 7, pp. 723-732
Closed Access | Times Cited: 212
glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data
Constantin Ahlmann-Eltze, Wolfgang Huber
Bioinformatics (2020) Vol. 36, Iss. 24, pp. 5701-5702
Open Access | Times Cited: 195
Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer’s disease pathology
Hansruedi Mathys, Zhuyu Peng, Carles A. Boix, et al.
Cell (2023) Vol. 186, Iss. 20, pp. 4365-4385.e27
Open Access | Times Cited: 192
TREM2 drives microglia response to amyloid-β via SYK-dependent and -independent pathways
Shoutang Wang, Raki Sudan, Vincent Peng, et al.
Cell (2022) Vol. 185, Iss. 22, pp. 4153-4169.e19
Open Access | Times Cited: 187
CXCL9:SPP1 macrophage polarity identifies a network of cellular programs that control human cancers
Ruben Bill, Pratyaksha Wirapati, Marius Messemaker, et al.
Science (2023) Vol. 381, Iss. 6657, pp. 515-524
Open Access | Times Cited: 185
A practical solution to pseudoreplication bias in single-cell studies
Kip D. Zimmerman, Mark A. Espeland, Carl D. Langefeld
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 175
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Matthew N. Tran, Kristen R. Maynard, Abby Spangler, et al.
Neuron (2021) Vol. 109, Iss. 19, pp. 3088-3103.e5
Open Access | Times Cited: 171
Human prostate cancer bone metastases have an actionable immunosuppressive microenvironment
Youmna Kfoury, Ninib Baryawno, Nicolas Sévère, et al.
Cancer Cell (2021) Vol. 39, Iss. 11, pp. 1464-1478.e8
Open Access | Times Cited: 165
CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes
Lilianne Barbar, Tanya Jain, Matthew Zimmer, et al.
Neuron (2020) Vol. 107, Iss. 3, pp. 436-453.e12
Open Access | Times Cited: 161
propeller:testing for differences in cell type proportions in single cell data
Belinda Phipson, Choon Boon Sim, Enzo R. Porrello, et al.
Bioinformatics (2022) Vol. 38, Iss. 20, pp. 4720-4726
Open Access | Times Cited: 153
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
Liang He, José Dávila-Velderrain, Tomokazu S. Sumida, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 103
Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
Maria Fasolino, Gregory W. Schwartz, Abhijeet R. Patil, et al.
Nature Metabolism (2022) Vol. 4, Iss. 2, pp. 284-299
Open Access | Times Cited: 90
An integrated cell atlas of the human lung in health and disease
Lisa Sikkema, Daniel Strobl, Luke Zappia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 80
Comparison of transformations for single-cell RNA-seq data
Constantin Ahlmann-Eltze, Wolfgang Huber
Nature Methods (2023) Vol. 20, Iss. 5, pp. 665-672
Open Access | Times Cited: 73
Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root
Trevor M. Nolan, Nemanja Vukašinović, Che‐Wei Hsu, et al.
Science (2023) Vol. 379, Iss. 6639
Open Access | Times Cited: 72
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