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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Benchmarking of cell type deconvolution pipelines for transcriptomics data
Francisco Avila Cobos, José Alquicira-Hernández, Joseph E. Powell, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 323

Showing 1-25 of 323 citing articles:

IOBR: Multi-Omics Immuno-Oncology Biological Research to Decode Tumor Microenvironment and Signatures
Dongqiang Zeng, Zilan Ye, Rongfang Shen, et al.
Frontiers in Immunology (2021) Vol. 12
Open Access | Times Cited: 743
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
Seyhan Yazar, José Alquicira-Hernández, Kristof Wing, et al.
Science (2022) Vol. 376, Iss. 6589
Closed Access | Times Cited: 335
Spatially informed cell-type deconvolution for spatial transcriptomics
Ying Ma, Xiang Zhou
Nature Biotechnology (2022) Vol. 40, Iss. 9, pp. 1349-1359
Open Access | Times Cited: 277
A guide for the diagnosis of rare and undiagnosed disease: beyond the exome
Shruti Marwaha, Joshua W. Knowles, Euan A. Ashley
Genome Medicine (2022) Vol. 14, Iss. 1
Open Access | Times Cited: 224
Deep learning in drug discovery: an integrative review and future challenges
Heba Askr, Enas Elgeldawi, Heba Aboul Ella, et al.
Artificial Intelligence Review (2022) Vol. 56, Iss. 7, pp. 5975-6037
Open Access | Times Cited: 182
Advances in spatial transcriptomic data analysis
Ruben Dries, Jiaji Chen, Natalie Del Rossi, et al.
Genome Research (2021) Vol. 31, Iss. 10, pp. 1706-1718
Open Access | Times Cited: 172
Big data in basic and translational cancer research
Peng Jiang, Sanju Sinha, Kenneth Aldape, et al.
Nature reviews. Cancer (2022) Vol. 22, Iss. 11, pp. 625-639
Open Access | Times Cited: 158
Overcoming false-positive gene-category enrichment in the analysis of spatially resolved transcriptomic brain atlas data
Ben Fulcher, Aurina Arnatkevičiūtė, Alex Fornito
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 126
Statistical and machine learning methods for spatially resolved transcriptomics data analysis
Zexian Zeng, Yawei Li, Yiming Li, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 125
A benchmark for RNA-seq deconvolution analysis under dynamic testing environments
Haijing Jin, Zhandong Liu
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 113
Neuroinflammation, Microglia and Implications for Retinal Ganglion Cell Survival and Axon Regeneration in Traumatic Optic Neuropathy
Ngan Pan Bennett Au, Chi Him Eddie
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 100
Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes
Aleksandr Zaitsev, Maksim Chelushkin, Daniiar Dyikanov, et al.
Cancer Cell (2022) Vol. 40, Iss. 8, pp. 879-894.e16
Open Access | Times Cited: 86
Comprehensive evaluation of deconvolution methods for human brain gene expression
Gavin J. Sutton, Daniel Poppe, Rebecca K. Simmons, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 79
Single-cell transcriptomic and spatial landscapes of the developing human pancreas
Oladapo E. Olaniru, Ulrich D. Kadolsky, Shichina Kannambath, et al.
Cell Metabolism (2022) Vol. 35, Iss. 1, pp. 184-199.e5
Open Access | Times Cited: 74
Advancing CAR T cell therapy through the use of multidimensional omics data
Jingwen Yang, Yamei Chen, Ying Jing, et al.
Nature Reviews Clinical Oncology (2023) Vol. 20, Iss. 4, pp. 211-228
Closed Access | Times Cited: 65
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 61
A Comprehensive Overview of RNA Deconvolution Methods and Their Application
Yebin Im, Yongsoo Kim
Molecules and Cells (2023) Vol. 46, Iss. 2, pp. 99-105
Open Access | Times Cited: 44
scMD facilitates cell type deconvolution using single-cell DNA methylation references
Manqi Cai, Jingtian Zhou, Chris McKennan, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 39
Challenges and perspectives in computational deconvolution of genomics data
Lana X. Garmire, Yijun Li, Qianhui Huang, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 391-400
Open Access | Times Cited: 20
Advancements in single-cell RNA sequencing and spatial transcriptomics: transforming biomedical research
Getnet Molla Desta, Alemayehu Godana Birhanu
Acta Biochimica Polonica (2025) Vol. 72
Open Access | Times Cited: 5
Intratumour microbiome associated with the infiltration of cytotoxic CD8+ T cells and patient survival in cutaneous melanoma
Gongjian Zhu, Haixiang Su, Caroline H. Johnson, et al.
European Journal of Cancer (2021) Vol. 151, pp. 25-34
Open Access | Times Cited: 93
From bench to bedside: Single-cell analysis for cancer immunotherapy
Emily F. Davis-Marcisak, Atul Deshpande, Genevieve Stein-O’Brien, et al.
Cancer Cell (2021) Vol. 39, Iss. 8, pp. 1062-1080
Open Access | Times Cited: 84
B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
Annika Frede, Paulo Czarnewski, Gustavo Monasterio, et al.
Immunity (2022) Vol. 55, Iss. 12, pp. 2336-2351.e12
Open Access | Times Cited: 63
Prime-seq, efficient and powerful bulk RNA sequencing
Aleksandar Janjic, Lucas E. Wange, Johannes Bagnoli, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 59
Cell-type-specific epigenetic effects of early life stress on the brain
Mouly F. Rahman, Patrick O. McGowan
Translational Psychiatry (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 50
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