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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Searching large-scale scRNA-seq databases via unbiased cell embedding with Cell BLAST
Zhi-Jie Cao, Wei Lin, Lu Shen, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 117

Showing 1-25 of 117 citing articles:

Eleven grand challenges in single-cell data science
David Lähnemann, Johannes Köster, Ewa Szczurek, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 990
A comparison of automatic cell identification methods for single-cell RNA sequencing data
Tamim Abdelaal, Lieke Michielsen, Davy Cats, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 480
Interpretation of T cell states from single-cell transcriptomics data using reference atlases
Massimo Andreatta, Jesús Corría-Osorio, Sören Müller, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 330
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi-Jie Cao, Ge Gao
Nature Biotechnology (2022) Vol. 40, Iss. 10, pp. 1458-1466
Open Access | Times Cited: 276
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data
Fan Yang, Wenchuan Wang, Fang Wang, et al.
Nature Machine Intelligence (2022) Vol. 4, Iss. 10, pp. 852-866
Open Access | Times Cited: 236
Efficient and precise single-cell reference atlas mapping with Symphony
Joyce B. Kang, Aparna Nathan, Kathryn Weinand, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 153
SciBet as a portable and fast single cell type identifier
Chenwei Li, Baolin Liu, Boxi Kang, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 133
Transformer for one stop interpretable cell type annotation
Jiawei Chen, Hao Xu, Wanyu Tao, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 94
Computational Approaches and Challenges in Spatial Transcriptomics
Shuangsang Fang, Bichao Chen, Yong Zhang, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 21, Iss. 1, pp. 24-47
Open Access | Times Cited: 63
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 45
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 16
Targeting the tumor microenvironment in B-cell lymphoma: challenges and opportunities
Yingyue Liu, Xiangxiang Zhou, Xin Wang
Journal of Hematology & Oncology (2021) Vol. 14, Iss. 1
Open Access | Times Cited: 79
Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces
Jiarui Ding, Aviv Regev
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 71
A Comprehensive Human Embryogenesis Reference Tool using Single-Cell RNA-Sequencing Data
Cheng Zhao, Álvaro Plaza Reyes, John P. Schell, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 66
Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
Matthew Brendel, Chang Su, Zilong Bai, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 814-835
Open Access | Times Cited: 40
CIForm as a Transformer-based model for cell-type annotation of large-scale single-cell RNA-seq data
Jing Xu, Aidi Zhang, Fang Liu, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 4
Closed Access | Times Cited: 24
Assessing GPT-4 for cell type annotation in single-cell RNA-seq analysis
Wenpin Hou, Zhicheng Ji
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 21
Single-cell RNA and transcriptome sequencing profiles identify immune-associated key genes in the development of diabetic kidney disease
Xueqin Zhang, Peng Chao, Lei Zhang, et al.
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 19
A comprehensive human embryo reference tool using single-cell RNA-sequencing data
Cheng Zhao, Álvaro Plaza Reyes, John P. Schell, et al.
Nature Methods (2024)
Open Access | Times Cited: 6
Application of bioinformatic tools in cell type classification for single-cell RNA-seq data
Shah Tania Akter Sujana, Md Shahjaman, Atul Chandra Singha
Computational Biology and Chemistry (2025) Vol. 115, pp. 108332-108332
Closed Access
Research Trends and Dynamics in Single-cell RNA Sequencing for Musculoskeletal Diseases: A Scientometric and Visualization Study
Siyang Cao, Yihao Wei, Yaohang Yue, et al.
International Journal of Medical Sciences (2025) Vol. 22, Iss. 3, pp. 528-550
Open Access
Single-Cell Genomics in Veterinary Science: Methods and Applications
Byeonghwi Lim, C.K. Lim, Seung-Hoon Lee, et al.
(2025), pp. 119-143
Closed Access
Automatic cell type identification methods for single-cell RNA sequencing
Bingbing Xie, Qin Jiang, Antonio Mora, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5874-5887
Open Access | Times Cited: 47
Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing
David Alan Brown, Michael Altermatt, Tatyana Dobreva, et al.
Frontiers in Immunology (2021) Vol. 12
Open Access | Times Cited: 43
Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale
Meng Yang, Yueyuxiao Yang, Chenxi Xie, et al.
Nature Machine Intelligence (2022) Vol. 4, Iss. 8, pp. 696-709
Open Access | Times Cited: 30
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