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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Prokaryotic taxonomy and nomenclature in the age of big sequence data
Philip Hugenholtz, Maria Chuvochina, Aharon Oren, et al.
The ISME Journal (2021) Vol. 15, Iss. 7, pp. 1879-1892
Open Access | Times Cited: 129

Showing 1-25 of 129 citing articles:

Greengenes2 unifies microbial data in a single reference tree
Daniel McDonald, Yueyu Jiang, Metin Balaban, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 5, pp. 715-718
Open Access | Times Cited: 150
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2024) Vol. 74, Iss. 3
Open Access | Times Cited: 99
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Qiyun Zhu, Shi Huang, Antonio González, et al.
mSystems (2022) Vol. 7, Iss. 2
Open Access | Times Cited: 68
An Overview of the Public Health Challenges in Diagnosing and Controlling Human Foodborne Pathogens
Ayman Elbehiry, Adil Abalkhail, Eman Marzouk, et al.
Vaccines (2023) Vol. 11, Iss. 4, pp. 725-725
Open Access | Times Cited: 61
The overlooked evolutionary dynamics of 16S rRNA revises its role as the “gold standard” for bacterial species identification
Oldřich Bartoš, Martin Chmel, Iva Swierczková
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 15
EFSA statement on the requirements for whole genome sequence analysis of microorganisms intentionally used in the food chain

EFSA Journal (2024) Vol. 22, Iss. 8
Open Access | Times Cited: 12
Phytoplasma Taxonomy: Nomenclature, Classification, and Identification
Wei Wei, Yan Zhao
Biology (2022) Vol. 11, Iss. 8, pp. 1119-1119
Open Access | Times Cited: 60
Cyanoseq: A database of cyanobacterial 16S rRNA gene sequences with curated taxonomy
Forrest W. Lefler, David E. Berthold, Haywood Dail Laughinghouse
Journal of Phycology (2023) Vol. 59, Iss. 3, pp. 470-480
Closed Access | Times Cited: 30
EasyCGTree: a pipeline for prokaryotic phylogenomic analysis based on core gene sets
Dao‐Feng Zhang, Wei He, Zongze Shao, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 23
Tightening the requirements for species diagnoses would help integrate DNA-based descriptions in taxonomic practice
Frank E. Rheindt, Patrice Bouchard, Richard L. Pyle, et al.
PLoS Biology (2023) Vol. 21, Iss. 8, pp. e3002251-e3002251
Open Access | Times Cited: 21
The intestinal digesta microbiota of tropical marine fish is largely uncultured and distinct from surrounding water microbiota
Melissa Soh, Ywee Chieh Tay, Co Sin Lee, et al.
npj Biofilms and Microbiomes (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 8
On Protein Loops, Prior Molecular States and Common Ancestors of Life
Kelsey Caetano-Anollés, M. Fayez Aziz, Fizza Mughal, et al.
Journal of Molecular Evolution (2024) Vol. 92, Iss. 5, pp. 624-646
Open Access | Times Cited: 7
Draft genome of a biological control agent against Bipolaris sorokiniana, the causal phytopathogen of spot blotch in wheat (Triticum turgidum L. subsp. durum): Bacillus inaquosorum TSO22
Pamela Helué Morales-Sandoval, Valeria Valenzuela-Ruíz, Gustavo Santoyo, et al.
Open Agriculture (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 6
Relating ecological diversity to genetic discontinuity across bacterial species
Hemanoel Passarelli‐Araujo, Thiago M. Venâncio, William P. Hanage
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Bacillus cabrialesii subsp. cabrialesii Strain TE5: A Promising Biological Control Bacterium against the Causal Agent of Spot Blotch in Wheat
Ixchel Campos-Avelar, Michelle Fabiela García Jaime, Pamela Helué Morales-Sandoval, et al.
Plants (2025) Vol. 14, Iss. 2, pp. 209-209
Open Access
Molecular Markers Specific for the Pseudomonadaceae Genera Provide Novel and Reliable Means for the Identification of Other Pseudomonas Strains/spp. Related to These Genera
Bashudev Rudra, Radhey S. Gupta
Genes (2025) Vol. 16, Iss. 2, pp. 183-183
Open Access
Perspective on taxonomic classification of uncultivated viruses
Bas E. Dutilh, Arvind Varsani, Yigang Tong, et al.
Current Opinion in Virology (2021) Vol. 51, pp. 207-215
Open Access | Times Cited: 46
Artificial intelligence in microbial natural product drug discovery: current and emerging role
Vinodh J. Sahayasheela, Manendra B. Lankadasari, Vipin Mohan Dan, et al.
Natural Product Reports (2022) Vol. 39, Iss. 12, pp. 2215-2230
Open Access | Times Cited: 31
Greengenes2 enables a shared data universe for microbiome studies
Daniel McDonald, Yueyu Jiang, Metin Balaban, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 28
Toward Characterizing Environmental Sources of Non-tuberculous Mycobacteria (NTM) at the Species Level: A Tutorial Review of NTM Phylogeny and Phylogenetic Classification
Lin Zhang, Tzu‐Yu Lin, Wen‐Tso Liu, et al.
ACS Environmental Au (2024) Vol. 4, Iss. 3, pp. 127-141
Open Access | Times Cited: 5
Phylogenomic and molecular markers based studies on clarifying the evolutionary relationships among Peptoniphilus species. Identification of several Genus-Level clades of Peptoniphilus species and transfer of some Peptoniphilus species to the genus Aedoeadaptatus
Megha Malhotra, Sarah Bello, Radhey S. Gupta
Systematic and Applied Microbiology (2024) Vol. 47, Iss. 2-3, pp. 126499-126499
Closed Access | Times Cited: 4
Use of genetically modified lactic acid bacteria and bifidobacteria as live delivery vectors for human and animal health
Romina Levit, Naima G. Cortes‐Perez, Alejandra de Moreno de LeBlanc, et al.
Gut Microbes (2022) Vol. 14, Iss. 1
Open Access | Times Cited: 23
Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
Adyasha Panda, Salim T. Islam, Gaurav Sharma
mBio (2022) Vol. 13, Iss. 3
Open Access | Times Cited: 21
Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
Dao‐Feng Zhang, Wei He, Zongze Shao, et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2023) Vol. 73, Iss. 11
Closed Access | Times Cited: 13
Collection and curation of prokaryotic genome assemblies from type strains at NCBI
Sivakumar Kannan, Shobha Sharma, Stacy Ciufo, et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2023) Vol. 73, Iss. 1
Open Access | Times Cited: 11
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