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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Integrating single-cell transcriptomic data across different conditions, technologies, and species
Andrew Butler, Paul Hoffman, Peter Smibert, et al.
Nature Biotechnology (2018) Vol. 36, Iss. 5, pp. 411-420
Open Access | Times Cited: 10774

Showing 1-25 of 10774 citing articles:

Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman, et al.
Cell (2019) Vol. 177, Iss. 7, pp. 1888-1902.e21
Open Access | Times Cited: 12324
Fast, sensitive and accurate integration of single-cell data with Harmony
Ilya Korsunsky, Nghia Millard, Jean Fan, et al.
Nature Methods (2019) Vol. 16, Iss. 12, pp. 1289-1296
Open Access | Times Cited: 5462
Dimensionality reduction for visualizing single-cell data using UMAP
Étienne Becht, Leland McInnes, John Healy, et al.
Nature Biotechnology (2018) Vol. 37, Iss. 1, pp. 38-44
Open Access | Times Cited: 4358
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Christoph Hafemeister, Rahul Satija
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 3317
Determining cell type abundance and expression from bulk tissues with digital cytometry
Aaron M. Newman, Chloé B. Steen, Chih Long Liu, et al.
Nature Biotechnology (2019) Vol. 37, Iss. 7, pp. 773-782
Open Access | Times Cited: 3155
DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner
Cell Systems (2019) Vol. 8, Iss. 4, pp. 329-337.e4
Open Access | Times Cited: 2543
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Waradon Sungnak, Ni Huang, Christophe Bécavin, et al.
Nature Medicine (2020) Vol. 26, Iss. 5, pp. 681-687
Open Access | Times Cited: 2543
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, et al.
Cell (2020) Vol. 181, Iss. 5, pp. 1016-1035.e19
Open Access | Times Cited: 2275
Single-cell reconstruction of the early maternal–fetal interface in humans
Roser Vento‐Tormo, Mirjana Efremova, Rachel A. Botting, et al.
Nature (2018) Vol. 563, Iss. 7731, pp. 347-353
Open Access | Times Cited: 1794
Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes
Timothy R. Hammond, Connor Dufort, Lasse Dissing‐Olesen, et al.
Immunity (2018) Vol. 50, Iss. 1, pp. 253-271.e6
Open Access | Times Cited: 1676
Current best practices in single‐cell RNA‐seq analysis: a tutorial
Malte D. Luecken, Fabian J. Theis
Molecular Systems Biology (2019) Vol. 15, Iss. 6
Open Access | Times Cited: 1658
Conserved cell types with divergent features in human versus mouse cortex
Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, et al.
Nature (2019) Vol. 573, Iss. 7772, pp. 61-68
Open Access | Times Cited: 1516
A single-cell atlas of the peripheral immune response in patients with severe COVID-19
Aaron J. Wilk, Arjun Rustagi, Nancy Q. Zhao, et al.
Nature Medicine (2020) Vol. 26, Iss. 7, pp. 1070-1076
Open Access | Times Cited: 1481
New insights into the genetic etiology of Alzheimer’s disease and related dementias
Céline Bellenguez, Fahri Küçükali, Iris E. Jansen, et al.
Nature Genetics (2022) Vol. 54, Iss. 4, pp. 412-436
Open Access | Times Cited: 1352
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
Jonas Schulte-Schrepping, Nico Reusch, Daniela Paclik, et al.
Cell (2020) Vol. 182, Iss. 6, pp. 1419-1440.e23
Open Access | Times Cited: 1347
SARS-CoV-2 Entry Genes Are Most Highly Expressed in Nasal Goblet and Ciliated Cells within Human Airways.
Waradon Sungnak, Ni Huang, Christophe Bécavin, et al.
PubMed (2020)
Open Access | Times Cited: 1313
NicheNet: modeling intercellular communication by linking ligands to target genes
Robin Browaeys, Wouter Saelens, Yvan Saeys
Nature Methods (2019) Vol. 17, Iss. 2, pp. 159-162
Closed Access | Times Cited: 1311
A molecular cell atlas of the human lung from single-cell RNA sequencing
Kyle J. Travaglini, Ahmad N. Nabhan, Lolita Penland, et al.
Nature (2020) Vol. 587, Iss. 7835, pp. 619-625
Open Access | Times Cited: 1299
Resolving the fibrotic niche of human liver cirrhosis at single-cell level
Prakash Ramachandran, Ross Dobie, John R. Wilson‐Kanamori, et al.
Nature (2019) Vol. 575, Iss. 7783, pp. 512-518
Open Access | Times Cited: 1193
Fibrosis: from mechanisms to medicines
Neil C. Henderson, Florian Rieder, Thomas A. Wynn
Nature (2020) Vol. 587, Iss. 7835, pp. 555-566
Open Access | Times Cited: 1136
A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade
Livnat Jerby‐Arnon, Parin Shah, Michael S. Cuoco, et al.
Cell (2018) Vol. 175, Iss. 4, pp. 984-997.e24
Open Access | Times Cited: 1131
Clonal replacement of tumor-specific T cells following PD-1 blockade
Kathryn E. Yost, Ansuman T. Satpathy, Daniel K. Wells, et al.
Nature Medicine (2019) Vol. 25, Iss. 8, pp. 1251-1259
Open Access | Times Cited: 1128
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data
Oscar Franzén, Li‐Ming Gan, Johan Björkegren
Database (2019) Vol. 2019
Open Access | Times Cited: 1107
Integrative single-cell analysis
Tim Stuart, Rahul Satija
Nature Reviews Genetics (2019) Vol. 20, Iss. 5, pp. 257-272
Closed Access | Times Cited: 1106
Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer
Lei Zhang, Ziyi Li, Katarzyna M. Skrzypczynska, et al.
Cell (2020) Vol. 181, Iss. 2, pp. 442-459.e29
Open Access | Times Cited: 1047
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