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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Agent-Based Modeling of Microbial Communities
Karthik Nagarajan, Congjian Ni, Ting Lu
ACS Synthetic Biology (2022) Vol. 11, Iss. 11, pp. 3564-3574
Open Access | Times Cited: 23

Showing 23 citing articles:

Agent-based models in cellular systems
Jonas Pleyer, Christian Fleck
Frontiers in Physics (2023) Vol. 10
Open Access | Times Cited: 25
Life at the borderlands: microbiomes of interfaces critical to One Health
Simon R. Law, Falko Mathes, Amy M. Paten, et al.
FEMS Microbiology Reviews (2024) Vol. 48, Iss. 2
Open Access | Times Cited: 9
Emerging models to study competitive interactions within bacterial communities
Mollie Virgo, Serge Mostowy, Brian T. Ho
Trends in Microbiology (2025)
Open Access | Times Cited: 1
Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communities
Amin Valiei, Andrew Dickson, Javad Aminian-Dehkordi, et al.
npj Biofilms and Microbiomes (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 6
From microbiome composition to functional engineering, one step at a time
Sebastian D. Burz, Senka Čaušević, Alma Dal Co, et al.
Microbiology and Molecular Biology Reviews (2023) Vol. 87, Iss. 4
Open Access | Times Cited: 14
Bacterial community dynamics as a result of growth-yield trade-off and multispecies metabolic interactions toward understanding the gut biofilm niche
Amin Valiei, Andrew Dickson, Javad Aminian-Dehkordi, et al.
BMC Microbiology (2024) Vol. 24, Iss. 1
Open Access | Times Cited: 4
Harnessing microbial division of labor for biomanufacturing: a review of laboratory and formal modeling approaches
Fatima Ceballos Rodriguez-Conde, S. Zhu, Duygu Dikicioǧlu
Critical Reviews in Biotechnology (2025), pp. 1-19
Open Access
Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0
Bastiaan Cockx, Tim Foster, Robert J. Clegg, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 2, pp. e1011303-e1011303
Open Access | Times Cited: 2
Integrative analysis of yeast colony growth
Tünde Gaizer, János Juhász, Bíborka Pillér, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 2
Building microbial kinetic models for environmental application: A theoretical perspective
Qusheng Jin
Applied Geochemistry (2023) Vol. 158, pp. 105782-105782
Open Access | Times Cited: 5
Granular Sludge—State of the Art
David G. Weissbrodt
Springer theses (2024), pp. 37-163
Closed Access | Times Cited: 1
Optimization of periodic treatment strategies for bacterial biofilms using an agent-based in silico approach
Johanna A. Blee, Thomas E. Gorochowski, Sabine Hauert
Journal of The Royal Society Interface (2024) Vol. 21, Iss. 213
Open Access | Times Cited: 1
Resource limitation and population fluctuation drive spatiotemporal order in microbial communities
Rohit Khandoori, Kaustav Mondal, Pushpita Ghosh
Soft Matter (2024) Vol. 20, Iss. 18, pp. 3823-3835
Open Access | Times Cited: 1
DyMMM-LEAPS: An ML-based framework for modulating evenness and stability in synthetic microbial communities
Ruhi Choudhary, Radhakrishnan Mahadevan
Biophysical Journal (2024) Vol. 123, Iss. 18, pp. 2974-2995
Closed Access | Times Cited: 1
Agent-Based Modeling and Simulation in System Safety and Risk Management
Kazem Samimi, Esmaeil Zarei, Mostafa Pouyakian
Studies in systems, decision and control (2024), pp. 405-432
Closed Access
Decoding pattern formation rules by integrating mechanistic modeling and deep learning
Jia Grace Lu, Nan Luo, Sizhe Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Optogenetic patterning generates multi-strain biofilms with spatially distributed antibiotic resistance
Xiaofan Jin, Ingmar H. Riedel‐Kruse
Nature Communications (2024) Vol. 15, Iss. 1
Open Access
Phenotypic Patterning through Copy Number Adaptation to Environmental Gradients
Paige Steppe, Camilo Rey-Bedón, Shalni Kumar, et al.
ACS Synthetic Biology (2024) Vol. 13, Iss. 3, pp. 728-735
Open Access
WebCM: A Web-Based Platform for Multiuser Individual-Based Modeling of Multicellular Microbial Populations and Communities
Jason Philippou, Guillermo Yáñez Feliú, Timothy J. Rudge
ACS Synthetic Biology (2024) Vol. 13, Iss. 6, pp. 1952-1955
Open Access
Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies
Juhyun Kim, Vı́ctor de Lorenzo, Ángel Goñi‐Moreno
Environmental Microbiology Reports (2023) Vol. 15, Iss. 6, pp. 708-715
Open Access | Times Cited: 1
Interplay of cell motility and self-secreted extracellular polymeric substance induced depletion effects on spatial patterning in a growing microbial colony
Palash Bera, Abdul Wasim, Pushpita Ghosh
Soft Matter (2023) Vol. 19, Iss. 42, pp. 8136-8149
Open Access | Times Cited: 1
Thermodynamically-consistent, reduced models of gene regulatory networks
Michael Pan, P.J. Gawthrop, Matthew Faria, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0
Bastiaan Cockx, Tim Foster, Robert J. Clegg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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