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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei
Liam Cassidy, Daniela Prasse, Dennis Linke, et al.
Journal of Proteome Research (2016) Vol. 15, Iss. 10, pp. 3773-3783
Closed Access | Times Cited: 44

Showing 1-25 of 44 citing articles:

De novo peptide sequencing by deep learning
Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, et al.
Proceedings of the National Academy of Sciences (2017) Vol. 114, Iss. 31, pp. 8247-8252
Open Access | Times Cited: 384
In Search of Lost Small Peptides
Serge Plaza, Gerben Menschaert, François Payre
Annual Review of Cell and Developmental Biology (2017) Vol. 33, Iss. 1, pp. 391-416
Closed Access | Times Cited: 113
Recent advances in mass spectrometry–based peptidomics workflows to identify short-open-reading-frame-encoded peptides and explore their functions
Bertrand Fabre, Jean‐Philippe Combier, Serge Plaza
Current Opinion in Chemical Biology (2021) Vol. 60, pp. 122-130
Open Access | Times Cited: 57
Bidirectional de novo peptide sequencing using a transformer model
Sangjeong Lee, Hyunwoo Kim
PLoS Computational Biology (2024) Vol. 20, Iss. 2, pp. e1011892-e1011892
Open Access | Times Cited: 11
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework
Hao Yang, Hao Chi, Wenfeng Zeng, et al.
Bioinformatics (2019) Vol. 35, Iss. 14, pp. i183-i190
Open Access | Times Cited: 74
Bottom‐up and top‐down proteomic approaches for the identification, characterization, and quantification of the low molecular weight proteome with focus on short open reading frame‐encoded peptides
Liam Cassidy, Philipp T. Kaulich, Sandra Maaß, et al.
PROTEOMICS (2021) Vol. 21, Iss. 23-24
Closed Access | Times Cited: 53
Multi-protease Approach for the Improved Identification and Molecular Characterization of Small Proteins and Short Open Reading Frame-Encoded Peptides
Philipp T. Kaulich, Liam Cassidy, Jürgen Bartel, et al.
Journal of Proteome Research (2021) Vol. 20, Iss. 5, pp. 2895-2903
Closed Access | Times Cited: 46
Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Hannes Petruschke, Christian Schori, Sebastian Canzler, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 44
Revealing the small proteome ofHaloferax volcaniiby combining ribosome profiling and small-protein optimized mass spectrometry
Lydia Hadjeras, Jürgen Bartel, Lisa‐Katharina Maier, et al.
microLife (2023) Vol. 4
Open Access | Times Cited: 16
Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions
Muhammad Aammar Tufail, Britta Jordan, Lydia Hadjeras, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Depletion of High-Molecular-Mass Proteins for the Identification of Small Proteins and Short Open Reading Frame Encoded Peptides in Cellular Proteomes
Liam Cassidy, Philipp T. Kaulich, Andreas Tholey
Journal of Proteome Research (2019) Vol. 18, Iss. 4, pp. 1725-1734
Closed Access | Times Cited: 38
Enrichment and identification of small proteins in a simplified human gut microbiome
Hannes Petruschke, John C. Anders, Peter F. Stadler, et al.
Journal of Proteomics (2019) Vol. 213, pp. 103604-103604
Closed Access | Times Cited: 37
Multidimensional separation schemes enhance the identification and molecular characterization of low molecular weight proteomes and short open reading frame-encoded peptides in top-down proteomics
Liam Cassidy, Andreas O. Helbig, Philipp T. Kaulich, et al.
Journal of Proteomics (2020) Vol. 230, pp. 103988-103988
Closed Access | Times Cited: 36
Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach
Stephan Fuchs, Martin Kucklick, Erik Lehmann, et al.
PLoS Genetics (2021) Vol. 17, Iss. 6, pp. e1009585-e1009585
Open Access | Times Cited: 28
Small proteins in bacteria – Big challenges in prediction and identification
Stephan Fuchs, Susanne Engelmann
PROTEOMICS (2023) Vol. 23, Iss. 23-24
Open Access | Times Cited: 11
Microproteins Tracking: When Size Does Really Matter
A. M. Ryskina, Anna A. Kudriaeva, Alexey A. Belogurov
Reviews and Advances in Chemistry (2025)
Closed Access
Optimized Sample Preparation Workflow for Improved Identification of Ghost Proteins
Tristan Cardon, Flore Hervé, Vivian Delcourt, et al.
Analytical Chemistry (2019) Vol. 92, Iss. 1, pp. 1122-1129
Closed Access | Times Cited: 35
Comprehensive Peptide Analysis of Mouse Brain Striatum Identifies Novel sORF‐Encoded Polypeptides
Harshavardhan Budamgunta, Volodimir Olexiouk, Walter Luyten, et al.
PROTEOMICS (2018) Vol. 18, Iss. 10
Closed Access | Times Cited: 33
Optimized Proteomics Workflow for the Detection of Small Proteins
Jürgen Bartel, Adithi R. Varadarajan, Thomas Sura, et al.
Journal of Proteome Research (2020) Vol. 19, Iss. 10, pp. 4004-4018
Closed Access | Times Cited: 31
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome
Sarah M. Hücker, Zachary Ardern, Tatyana Goldberg, et al.
PLoS ONE (2017) Vol. 12, Iss. 9, pp. e0184119-e0184119
Open Access | Times Cited: 31
Small RNAs Involved in Regulation of Nitrogen Metabolism
Daniela Prasse, Ruth A. Schmitz
Microbiology Spectrum (2018) Vol. 6, Iss. 4
Closed Access | Times Cited: 28
Shedding Light on the Ghost Proteome
Tristan Cardon, Isabelle Fournier, Michel Salzet
Trends in Biochemical Sciences (2020) Vol. 46, Iss. 3, pp. 239-250
Open Access | Times Cited: 26
High complexity of Glutamine synthetase regulation in Methanosarcina mazei: Small protein 26 interacts and enhances glutamine synthetase activity
Miriam Gutt, Britta Jordan, Katrin Weidenbach, et al.
FEBS Journal (2021) Vol. 288, Iss. 18, pp. 5350-5373
Open Access | Times Cited: 22
Complementarity of Different SDS‐PAGE Gel Staining Methods for the Identification of Short Open Reading Frame‐Encoded Peptides
Philipp T. Kaulich, Liam Cassidy, Katrin Weidenbach, et al.
PROTEOMICS (2020) Vol. 20, Iss. 19-20
Open Access | Times Cited: 21
Small Proteins in Archaea, a Mainly Unexplored World
Katrin Weidenbach, Miriam Gutt, Liam Cassidy, et al.
Journal of Bacteriology (2021) Vol. 204, Iss. 1
Open Access | Times Cited: 17
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