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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The Discovery of a Putative Allosteric Site in the SARS-CoV-2 Spike Protein Using an Integrated Structural/Dynamic Approach
Luisa Di Paola, Hamid Hadi‐Alijanvand, Xingyu Song, et al.
Journal of Proteome Research (2020) Vol. 19, Iss. 11, pp. 4576-4586
Open Access | Times Cited: 74

Showing 1-25 of 74 citing articles:

Distant residues modulate conformational opening in SARS-CoV-2 spike protein
Dhiman Ray, Ly Le, Ioan Andricioaei
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 43
Open Access | Times Cited: 85
COVID-19 and iron dysregulation: distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein
Sepehr Ehsani
Biology Direct (2020) Vol. 15, Iss. 1
Open Access | Times Cited: 83
Molecular Simulations and Network Modeling Reveal an Allosteric Signaling in the SARS-CoV-2 Spike Proteins
Gennady M. Verkhivker
Journal of Proteome Research (2020) Vol. 19, Iss. 11, pp. 4587-4608
Open Access | Times Cited: 78
Comparative Perturbation-Based Modeling of the SARS-CoV-2 Spike Protein Binding with Host Receptor and Neutralizing Antibodies: Structurally Adaptable Allosteric Communication Hotspots Define Spike Sites Targeted by Global Circulating Mutations
Gennady M. Verkhivker, Steve Agajanian, Deniz Yazar Oztas, et al.
Biochemistry (2021) Vol. 60, Iss. 19, pp. 1459-1484
Open Access | Times Cited: 77
Dynamic Network Modeling of Allosteric Interactions and Communication Pathways in the SARS-CoV-2 Spike Trimer Mutants: Differential Modulation of Conformational Landscapes and Signal Transmission via Cascades of Regulatory Switches
Gennady M. Verkhivker, Luisa Di Paola
The Journal of Physical Chemistry B (2021) Vol. 125, Iss. 3, pp. 850-873
Closed Access | Times Cited: 73
Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies
Gennady M. Verkhivker, Luisa Di Paola
The Journal of Physical Chemistry B (2021) Vol. 125, Iss. 18, pp. 4596-4619
Closed Access | Times Cited: 72
Methodology-Centered Review of Molecular Modeling, Simulation, and Prediction of SARS-CoV-2
Kaifu Gao, Rui Wang, Jiahui Chen, et al.
Chemical Reviews (2022) Vol. 122, Iss. 13, pp. 11287-11368
Open Access | Times Cited: 58
Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based Scanning Reveals the Allosteric Duality of Functionally Adaptable Hotspots
Gennady M. Verkhivker, Steve Agajanian, Deniz Yaşar Öztaş, et al.
Journal of Chemical Theory and Computation (2021) Vol. 17, Iss. 7, pp. 4578-4598
Closed Access | Times Cited: 52
Systematic review on role of structure based drug design (SBDD) in the identification of anti-viral leads against SARS-Cov-2
Nilesh Gajanan Bajad, Rayala Swetha, Gopichand Gutti, et al.
Current Research in Pharmacology and Drug Discovery (2021) Vol. 2, pp. 100026-100026
Open Access | Times Cited: 47
SARS-CoV-2 mechanisms of cell tropism in various organs considering host factors
Emad Behboudi, Seyed Nooreddin Faraji, Gholamreza Daryabor, et al.
Heliyon (2024) Vol. 10, Iss. 4, pp. e26577-e26577
Open Access | Times Cited: 6
Decoding Mechanisms of PTEN Missense Mutations in Cancer and Autism Spectrum Disorder using Interpretable Machine Learning Approaches
Miao Yang, Jingran Wang, Ziyun Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
NetSDR: Drug repurposing for cancers based on subtype-specific network modularization and perturbation analysis
Bin Yang, Wanshi Li, Zhen Xu, et al.
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease (2025) Vol. 1871, Iss. 3, pp. 167688-167688
Closed Access
Coevolution, Dynamics and Allostery Conspire in Shaping Cooperative Binding and Signal Transmission of the SARS-CoV-2 Spike Protein with Human Angiotensin-Converting Enzyme 2
Gennady M. Verkhivker
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 21, pp. 8268-8268
Open Access | Times Cited: 45
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies
Vaishali Waman, Neeladri Sen, Mihály Váradi, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 2, pp. 742-768
Open Access | Times Cited: 41
Identification of Potential Binding Sites of Sialic Acids on the RBD Domain of SARS-CoV-2 Spike Protein
Bingqian Li, Lin Wang, Huan Ge, et al.
Frontiers in Chemistry (2021) Vol. 9
Open Access | Times Cited: 32
Targeting protein-protein interactions with low molecular weight and short peptide modulators: insights on disease pathways and starting points for drug discovery
Daniela Trisciuzzi, Bruno O. Villoutreix, Lydia Siragusa, et al.
Expert Opinion on Drug Discovery (2023) Vol. 18, Iss. 7, pp. 737-752
Closed Access | Times Cited: 12
Clinical HDAC Inhibitors Are Effective Drugs to Prevent the Entry of SARS-CoV2
Ke Liu, Rongfeng Zou, Wenqiang Cui, et al.
ACS Pharmacology & Translational Science (2020) Vol. 3, Iss. 6, pp. 1361-1370
Open Access | Times Cited: 36
Distant sequence similarity between hepcidin and the novel coronavirus spike glycoprotein: a potential hint at the possibility of local iron dysregulation in COVID-19
Sepehr Ehsani
arXiv (Cornell University) (2020)
Open Access | Times Cited: 33
Molecular Insights into Human Transmembrane Protease Serine-2 (TMPS2) Inhibitors against SARS-CoV2: Homology Modelling, Molecular Dynamics, and Docking Studies
Safaa M. Kishk, Rania Kishk, Asmaa S. A. Yassen, et al.
Molecules (2020) Vol. 25, Iss. 21, pp. 5007-5007
Open Access | Times Cited: 32
Computational analysis of the sequence-structure relation in SARS-CoV-2 spike protein using protein contact networks
Pietro Hiram Guzzi, Luisa Di Paola, Barbara Puccio, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 10
Applications of graph theory in studying protein structure, dynamics, and interactions
Ziyun Zhou, Guang Hu
Journal of Mathematical Chemistry (2023) Vol. 62, Iss. 10, pp. 2562-2580
Closed Access | Times Cited: 10
Calculation of centralities in protein kinase A
Alexandr P. Kornev, Phillip C. Aoto, Susan S. Taylor
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 47
Open Access | Times Cited: 17
Studying the Effects of ACE2 Mutations on the Stability, Dynamics, and Dissociation Process of SARS-CoV-2 S1/hACE2 Complexes
Hamid Hadi‐Alijanvand, Maryam Rouhani
Journal of Proteome Research (2020) Vol. 19, Iss. 11, pp. 4609-4623
Open Access | Times Cited: 25
Computational Study of SARS-CoV-2 RNA Dependent RNA Polymerase Allosteric Site Inhibition
Shah Faisal, Syed Badshah, Bibi Kubra, et al.
Molecules (2021) Vol. 27, Iss. 1, pp. 223-223
Open Access | Times Cited: 21
PCN-Miner: an open-source extensible tool for the analysis of Protein Contact Networks
Pietro Hiram Guzzi, Luisa Di Paola, Alessandro Giuliani, et al.
Bioinformatics (2022) Vol. 38, Iss. 17, pp. 4235-4237
Closed Access | Times Cited: 15
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