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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Accelerating COVID-19 Research Using Molecular Dynamics Simulation
Aditya K. Padhi, Soumya Lipsa Rath, Timir Tripathi
The Journal of Physical Chemistry B (2021) Vol. 125, Iss. 32, pp. 9078-9091
Closed Access | Times Cited: 64

Showing 1-25 of 64 citing articles:

Telaprevir is a potential drug for repurposing against SARS-CoV-2: computational and in vitro studies
Amal Mahmoud, Ahmed Mostafa, Ahmed A. Al‐Karmalawy, et al.
Heliyon (2021) Vol. 7, Iss. 9, pp. e07962-e07962
Open Access | Times Cited: 78
Applications of Molecular Dynamics Simulation in Protein Study
Siddharth Sinha, Benjamin Tam, San Ming Wang
Membranes (2022) Vol. 12, Iss. 9, pp. 844-844
Open Access | Times Cited: 61
Neoechinulin A as a Promising SARS-CoV-2 Mpro Inhibitor: In Vitro and In Silico Study Showing the Ability of Simulations in Discerning Active from Inactive Enzyme Inhibitors
Hani A. Alhadrami, Gaia Burgio, Bathini Thissera, et al.
Marine Drugs (2022) Vol. 20, Iss. 3, pp. 163-163
Open Access | Times Cited: 28
Therapeutic Protein-Based Vaccines
Shaban Ahmad, Vandana Dahiya, Arpana Vibhuti, et al.
(2023), pp. 355-384
Closed Access | Times Cited: 16
The Stability of the SARS-COV-2 Structure in the Presence of Variable External Heat Flux in the Vicinity of the Water/Silver Nanofluid: A Molecular Dynamics Simulation
Dongfang Wu, Ali B.M. Ali, Abrar A. Mohammed, et al.
Case Studies in Thermal Engineering (2025), pp. 105994-105994
Open Access
Biophysics of SARS-CoV-2 spike protein’s receptor-binding domain interaction with ACE2 and neutralizing antibodies: from computation to functional insights
Fernando Luís Barroso da Silva, Karen Paco, Aatto Laaksonen, et al.
Biophysical Reviews (2025)
Closed Access
DFT and MD simulation investigation of favipiravir as an emerging antiviral option against viral protease (3CLpro) of SARS-CoV-2
Pooja Yadav, Meenakshi Rana, Papia Chowdhury
Journal of Molecular Structure (2021) Vol. 1246, pp. 131253-131253
Open Access | Times Cited: 38
Systematic virtual screening in search of SARS CoV-2 inhibitors against spike glycoprotein: pharmacophore screening, molecular docking, ADMET analysis and MD simulations
Tejas M. Dhameliya, Prinsa R. Nagar, Normi D. Gajjar
Molecular Diversity (2022) Vol. 26, Iss. 5, pp. 2775-2792
Open Access | Times Cited: 25
Molecular insights into the differential dynamics of SARS-CoV-2 variants of concern
Nabanita Mandal, Aditya K. Padhi, Soumya Lipsa Rath
Journal of Molecular Graphics and Modelling (2022) Vol. 114, pp. 108194-108194
Open Access | Times Cited: 24
Molecular insights and optimization strategies for the competitive binding of engineered ACE2 proteins: a multiple replica molecular dynamics study
Jiahao Sun, Xinguo Liu, Shaolong Zhang, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 41, pp. 28479-28496
Closed Access | Times Cited: 12
Toward A Regulatory Pathway for the Use of in Silico Trials in the CE Marking of Medical Devices
Francesco Pappalardo, John Wilkinson, François Busquet, et al.
IEEE Journal of Biomedical and Health Informatics (2022) Vol. 26, Iss. 11, pp. 5282-5286
Open Access | Times Cited: 20
Molecular dynamics studies reveal structural and functional features of the SARS‐CoV‐2 spike protein
Ludovico Pipitò, Roxana‐Maria Rujan, Christopher A. Reynolds, et al.
BioEssays (2022) Vol. 44, Iss. 9
Open Access | Times Cited: 19
Molecular dynamics simulations highlight the altered binding landscape at the spike-ACE2 interface between the Delta and Omicron variants compared to the SARS-CoV-2 original strain
Eleni Pitsillou, Julia Liang, Raymond C. Beh, et al.
Computers in Biology and Medicine (2022) Vol. 149, pp. 106035-106035
Open Access | Times Cited: 19
Molecular dynamics simulations: Principles, methods, and applications in protein conformational dynamics
Aditya K. Padhi, Matej Janežič, Kam Y. J. Zhang
Elsevier eBooks (2022), pp. 439-454
Closed Access | Times Cited: 18
All-Atom Simulations of Human ACE2-Spike Protein RBD Complexes for SARS-CoV-2 and Some of its Variants: Nature of Interactions and Free Energy Diagrams for Dissociation of the Protein Complexes
Saheb Dutta, Bhavana Panthi, Amalendu Chandra
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 29, pp. 5375-5389
Closed Access | Times Cited: 18
Interface‐based design of the favipiravir‐binding site in SARS‐CoV‐2 RNA‐dependent RNA polymerase reveals mutations conferring resistance to chain termination
Aditya K. Padhi, Jagneshwar Dandapat, Prakash Saudagar, et al.
FEBS Letters (2021) Vol. 595, Iss. 18, pp. 2366-2382
Open Access | Times Cited: 26
Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation
Hung Van Nguyen, Hoang Linh Nguyen, Pham Dang Lan, et al.
Chemical Society Reviews (2023) Vol. 52, Iss. 18, pp. 6497-6553
Closed Access | Times Cited: 8
Computational resources and chemoinformatics for translational health research
Tripti Tripathi, Dev Bukhsh Singh, Timir Tripathi
Advances in protein chemistry and structural biology (2024), pp. 27-55
Closed Access | Times Cited: 2
Effect of an Inhibitor on the ACE2-Receptor-Binding Domain of SARS-CoV-2
Gaurav Sharma, Lin Frank Song, Kenneth M. Merz
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 24, pp. 6574-6585
Open Access | Times Cited: 12
Deep learning-based molecular dynamics simulation for structure-based drug design against SARS-CoV-2
Yao Sun, Yanqi Jiao, Chengcheng Shi, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 5014-5027
Open Access | Times Cited: 12
Bionics design of affinity peptide inhibitors for SARS-CoV-2 RBD to block SARS-CoV-2 RBD-ACE2 interactions
Xiaofeng Liu, Luying Jiang, Li Li, et al.
Heliyon (2023) Vol. 9, Iss. 1, pp. e12890-e12890
Open Access | Times Cited: 7
In silico screening, ADMET analysis and MD simulations of phytochemicals of Onosma bracteata Wall. as SARS CoV-2 inhibitors
Udaykumar G. Vegad, Normi D. Gajjar, Prinsa R. Nagar, et al.
3 Biotech (2023) Vol. 13, Iss. 7
Open Access | Times Cited: 7
Cetaceans as bio-indicators revealed the increased risks of triclosan exposure and associated thyroid hormone disruption during the COVID-19 pandemic
Yongwei Guo, Wei Shi, Zhiwei Liu, et al.
Journal of Hazardous Materials (2023) Vol. 459, pp. 132289-132289
Closed Access | Times Cited: 7
Polyphenolic Natural Products Active In Silico Against SARS-CoV-2 Spike Receptor Binding Domains and Non-structural Proteins - A Review
Allan Patrick G. Macabeo, Mark Tristan J. Quimque, Kin Israel Notarte, et al.
Combinatorial Chemistry & High Throughput Screening (2021) Vol. 26, Iss. 3, pp. 459-488
Closed Access | Times Cited: 15
Modeling the Dynamics of Protein–Protein Interfaces, How and Why?
Ezgi Karaca, Chantal Prévost, Sophie Sacquin‐Mora
Molecules (2022) Vol. 27, Iss. 6, pp. 1841-1841
Open Access | Times Cited: 10
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