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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Ligand Gaussian Accelerated Molecular Dynamics (LiGaMD): Characterization of Ligand Binding Thermodynamics and Kinetics
Yinglong Miao, Apurba Bhattarai, Jinan Wang
Journal of Chemical Theory and Computation (2020) Vol. 16, Iss. 9, pp. 5526-5547
Open Access | Times Cited: 145

Showing 1-25 of 145 citing articles:

Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery
Tai‐Sung Lee, Bryce K. Allen, Timothy J. Giese, et al.
Journal of Chemical Information and Modeling (2020) Vol. 60, Iss. 11, pp. 5595-5623
Open Access | Times Cited: 301
Integration of Molecular Docking Analysis and Molecular Dynamics Simulations for Studying Food Proteins and Bioactive Peptides
Abraham Vidal‐Limon, José E. Aguilar-Tóala, Andrea M. Liceaga
Journal of Agricultural and Food Chemistry (2022) Vol. 70, Iss. 4, pp. 934-943
Open Access | Times Cited: 272
Gaussian accelerated molecular dynamics: Principles and applications
Jinan Wang, Pablo Arantes, Apurba Bhattarai, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2021) Vol. 11, Iss. 5
Open Access | Times Cited: 225
Accurate determination of protein:ligand standard binding free energies from molecular dynamics simulations
Haohao Fu, Haochuan Chen, Marharyta Blazhynska, et al.
Nature Protocols (2022) Vol. 17, Iss. 4, pp. 1114-1141
Open Access | Times Cited: 106
Spectroscopy and molecular simulation on the interaction of Nano-Kaempferol prepared by oil-in-water with two carrier proteins: An investigation of protein–protein interaction
Maryam Kaffash, Shakiba Tolou-Shikhzadeh-Yazdi, Samane Soleimani, et al.
Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy (2023) Vol. 309, pp. 123815-123815
Closed Access | Times Cited: 80
Stereoselective amino acid synthesis by synergistic photoredox-pyridoxal radical biocatalysis
Lei Cheng, Dian Li, Binh Khanh, et al.
Science (2023) Vol. 381, Iss. 6656, pp. 444-451
Open Access | Times Cited: 77
Pharmacological modulation of septins restores calcium homeostasis and is neuroprotective in models of Alzheimer’s disease
Katrien Princen, Tom Van Dooren, Marit van Gorsel, et al.
Science (2024) Vol. 384, Iss. 6699
Open Access | Times Cited: 16
Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding
Jinan Wang, Yinglong Miao
The Journal of Chemical Physics (2020) Vol. 153, Iss. 15
Open Access | Times Cited: 106
GLOW: A Workflow Integrating Gaussian-Accelerated Molecular Dynamics and Deep Learning for Free Energy Profiling
N. Hung, Jinan Wang, Apurba Bhattarai, et al.
Journal of Chemical Theory and Computation (2022) Vol. 18, Iss. 3, pp. 1423-1436
Open Access | Times Cited: 52
Enhanced-Sampling Simulations for the Estimation of Ligand Binding Kinetics: Current Status and Perspective
Katya Ahmad, Andrea Rizzi, Riccardo Capelli, et al.
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 52
Biology and medicine in the landscape of quantum advantages
Benjamin A. Cordier, Nicolas P. D. Sawaya, Gian Giacomo Guerreschi, et al.
Journal of The Royal Society Interface (2022) Vol. 19, Iss. 196
Open Access | Times Cited: 48
Water regulates the residence time of Benzamidine in Trypsin
Narjes Ansari, Valerio Rizzi, Michele Parrinello
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 45
Protein–Protein Interaction-Gaussian Accelerated Molecular Dynamics (PPI-GaMD): Characterization of Protein Binding Thermodynamics and Kinetics
Jinan Wang, Yinglong Miao
Journal of Chemical Theory and Computation (2022) Vol. 18, Iss. 3, pp. 1275-1285
Open Access | Times Cited: 41
Advances in computational methods for ligand binding kinetics
Farzin Sohraby, Ariane Nunes‐Alves
Trends in Biochemical Sciences (2022) Vol. 48, Iss. 5, pp. 437-449
Closed Access | Times Cited: 38
Predicting Biomolecular Binding Kinetics: A Review
Jinan Wang, N. Hung, Kushal Koirala, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 8, pp. 2135-2148
Open Access | Times Cited: 37
How the Conformational Movement of the Substrate Drives the Regioselective C–N Bond Formation in P450 TleB: Insights from Molecular Dynamics Simulations and Quantum Mechanical/Molecular Mechanical Calculations
Zhanfeng Wang, Wenwen Diao, Peng Wu, et al.
Journal of the American Chemical Society (2023) Vol. 145, Iss. 13, pp. 7252-7267
Closed Access | Times Cited: 36
Structural insights into ligand recognition and activation of the medium-chain fatty acid-sensing receptor GPR84
Heng Liu, Qing Zhang, Xinheng He, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 28
Ligand Gaussian Accelerated Molecular Dynamics 2 (LiGaMD2): Improved Calculations of Ligand Binding Thermodynamics and Kinetics with Closed Protein Pocket
Jinan Wang, Yinglong Miao
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 3, pp. 733-745
Open Access | Times Cited: 25
Predicting Protein–Ligand Binding and Unbinding Kinetics with Biased MD Simulations and Coarse-Graining of Dynamics: Current State and Challenges
Steffen Wolf
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 10, pp. 2902-2910
Closed Access | Times Cited: 23
Activating Point Mutations in the MET Kinase Domain Represent a Unique Molecular Subset of Lung Cancer and Other Malignancies Targetable with MET Inhibitors
Federica Pecci, Seshiru Nakazawa, Biagio Ricciuti, et al.
Cancer Discovery (2024) Vol. 14, Iss. 8, pp. 1440-1456
Open Access | Times Cited: 14
Roles of Accelerated Molecular Dynamics Simulations in Predictions of Binding Kinetic Parameters
Jianzhong Chen, Wei Wang, Haibo Sun, et al.
Mini-Reviews in Medicinal Chemistry (2024) Vol. 24, Iss. 14, pp. 1323-1333
Closed Access | Times Cited: 9
Understanding the impact of binding free energy and kinetics calculations in modern drug discovery
Victor Ayo Adediwura, Kushal Koirala, N. Hung, et al.
Expert Opinion on Drug Discovery (2024) Vol. 19, Iss. 6, pp. 671-682
Closed Access | Times Cited: 9
Computational Chemistry in Structure-Based Solute Carrier Transporter Drug Design: Recent Advances and Future Perspectives
Gao Tu, Tingting Fu, Guoxun Zheng, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1433-1455
Closed Access | Times Cited: 8
Molecular dynamics-based identification of binding pathways and two distinct high-affinity sites for succinate in succinate receptor 1/GPR91
Aslihan Shenol, Michael Lückmann, Mette Trauelsen, et al.
Molecular Cell (2024) Vol. 84, Iss. 5, pp. 955-966.e4
Open Access | Times Cited: 8
Selectivity and Ranking of Tight-Binding JAK-STAT Inhibitors Using Markovian Milestoning with Voronoi Tessellations
Anupam Anand Ojha, Ambuj Srivastava, Lane Votapka, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 8, pp. 2469-2482
Open Access | Times Cited: 18
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