OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
AmberTools
David A. Case, Hasan Metin Aktulga, Kellon Belfon, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 20, pp. 6183-6191
Open Access | Times Cited: 494
David A. Case, Hasan Metin Aktulga, Kellon Belfon, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 20, pp. 6183-6191
Open Access | Times Cited: 494
Showing 1-25 of 494 citing articles:
CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
An artificial intelligence accelerated virtual screening platform for drug discovery
Guangfeng Zhou, Domnița-Valeria Rusnac, Hahnbeom Park, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
Guangfeng Zhou, Domnița-Valeria Rusnac, Hahnbeom Park, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
Acetate enables metabolic fitness and cognitive performance during sleep disruption
Qinqin He, Liwei Ji, Yanyan Wang, et al.
Cell Metabolism (2024) Vol. 36, Iss. 9, pp. 1998-2014.e15
Closed Access | Times Cited: 12
Qinqin He, Liwei Ji, Yanyan Wang, et al.
Cell Metabolism (2024) Vol. 36, Iss. 9, pp. 1998-2014.e15
Closed Access | Times Cited: 12
Heterogeneous and multiple conformational transition pathways between pseudoknots of the SARS-CoV-2 frameshift element
Shuting Yan, Tamar Schlick
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 4
Open Access | Times Cited: 1
Shuting Yan, Tamar Schlick
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 4
Open Access | Times Cited: 1
MS Binding Assays with UNC0642 as reporter ligand for the MB327 binding site of the nicotinic acetylcholine receptor
V. Nitsche, Georg Höfner, Jesko Kaiser, et al.
Toxicology Letters (2024) Vol. 392, pp. 94-106
Open Access | Times Cited: 7
V. Nitsche, Georg Höfner, Jesko Kaiser, et al.
Toxicology Letters (2024) Vol. 392, pp. 94-106
Open Access | Times Cited: 7
A subgroup of light-driven sodium pumps with an additional Schiff base counterion
Elizaveta Podoliak, Gerrit H. U. Lamm, Egor Marin, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Elizaveta Podoliak, Gerrit H. U. Lamm, Egor Marin, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Amino Acid-Dependent Material Properties of Tetrapeptide Condensates
Yi Zhang, Ramesh Prasad, Siyuan Su, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Yi Zhang, Ramesh Prasad, Siyuan Su, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Single-molecule sensing inside stereo- and regio-defined hetero-nanopores
Wei Liu, Qiang Zhu, Chao‐Nan Yang, et al.
Nature Nanotechnology (2024) Vol. 19, Iss. 11, pp. 1693-1701
Closed Access | Times Cited: 7
Wei Liu, Qiang Zhu, Chao‐Nan Yang, et al.
Nature Nanotechnology (2024) Vol. 19, Iss. 11, pp. 1693-1701
Closed Access | Times Cited: 7
Introductory Tutorials for Simulating Protein Dynamics with GROMACS
Justin A. Lemkul
The Journal of Physical Chemistry B (2024)
Open Access | Times Cited: 7
Justin A. Lemkul
The Journal of Physical Chemistry B (2024)
Open Access | Times Cited: 7
Quantum biochemical analysis of the binding interactions between a potential inhibitory drug and the Ebola viral glycoprotein
Jaerdyson M. da Rocha, Daniel Melo de Oliveira Campos, Stephany Campanelli, et al.
Journal of Biomolecular Structure and Dynamics (2024), pp. 1-17
Closed Access | Times Cited: 6
Jaerdyson M. da Rocha, Daniel Melo de Oliveira Campos, Stephany Campanelli, et al.
Journal of Biomolecular Structure and Dynamics (2024), pp. 1-17
Closed Access | Times Cited: 6
Surface-Accelerated String Method for Locating Minimum Free Energy Paths
Timothy J. Giese, Şölen Ekesan, Erika McCarthy, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 5, pp. 2058-2073
Closed Access | Times Cited: 6
Timothy J. Giese, Şölen Ekesan, Erika McCarthy, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 5, pp. 2058-2073
Closed Access | Times Cited: 6
Insights into PFAS environmental fate through computational chemistry: A review
Bruno Bezerra de Souza, Jay N. Meegoda
The Science of The Total Environment (2024) Vol. 926, pp. 171738-171738
Closed Access | Times Cited: 6
Bruno Bezerra de Souza, Jay N. Meegoda
The Science of The Total Environment (2024) Vol. 926, pp. 171738-171738
Closed Access | Times Cited: 6
Sire: An interoperability engine for prototyping algorithms and exchanging information between molecular simulation programs
Christopher Woods, Lester O. Hedges, Adrian J. Mulholland, et al.
The Journal of Chemical Physics (2024) Vol. 160, Iss. 20
Open Access | Times Cited: 6
Christopher Woods, Lester O. Hedges, Adrian J. Mulholland, et al.
The Journal of Chemical Physics (2024) Vol. 160, Iss. 20
Open Access | Times Cited: 6
Structure of the human dopamine transporter and mechanisms of inhibition
Dushyant Kumar Srivastava, Vikas Navratna, Dilip K. Tosh, et al.
Nature (2024) Vol. 632, Iss. 8025, pp. 672-677
Open Access | Times Cited: 6
Dushyant Kumar Srivastava, Vikas Navratna, Dilip K. Tosh, et al.
Nature (2024) Vol. 632, Iss. 8025, pp. 672-677
Open Access | Times Cited: 6
The β- d - manno -heptoses are immune agonists across kingdoms
Yue Tang, Xiaoying Tian, Min Wang, et al.
Science (2024) Vol. 385, Iss. 6709, pp. 678-684
Closed Access | Times Cited: 6
Yue Tang, Xiaoying Tian, Min Wang, et al.
Science (2024) Vol. 385, Iss. 6709, pp. 678-684
Closed Access | Times Cited: 6
Amino acid-dependent phase equilibrium and material properties of tetrapeptide condensates
Yi Zhang, Ramesh Prasad, Siyuan Su, et al.
Cell Reports Physical Science (2024) Vol. 5, Iss. 10, pp. 102218-102218
Open Access | Times Cited: 6
Yi Zhang, Ramesh Prasad, Siyuan Su, et al.
Cell Reports Physical Science (2024) Vol. 5, Iss. 10, pp. 102218-102218
Open Access | Times Cited: 6
Molecular dynamics of transferrin receptor binder peptides: unlocking blood-brain barrier for enhanced CNS drug delivery
Luiz Patrick Cordeiro Josino, Renan Patrick da Penha Valente, M.L. Silva, et al.
Journal of Biomolecular Structure and Dynamics (2025), pp. 1-10
Closed Access
Luiz Patrick Cordeiro Josino, Renan Patrick da Penha Valente, M.L. Silva, et al.
Journal of Biomolecular Structure and Dynamics (2025), pp. 1-10
Closed Access
Molecular simulations reveal intricate coupling between agonist-bound β-Adrenergic Receptors and G Protein
Yanxiao Han, John R.D. Dawson, Kevin R. DeMarco, et al.
iScience (2025) Vol. 28, Iss. 2, pp. 111741-111741
Open Access
Yanxiao Han, John R.D. Dawson, Kevin R. DeMarco, et al.
iScience (2025) Vol. 28, Iss. 2, pp. 111741-111741
Open Access
Sticky organisms create underwater biological adhesives driven by interactions between EGF- and GlcNAc- containing polysaccharides
Jimin Choi, Seunghyeon Lee, Y LEE, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Jimin Choi, Seunghyeon Lee, Y LEE, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Dehydrogenase versus Oxidase Function: The Interplay between Substrate Binding and Flavin Microenvironment
Teresa Benedetta Guerriere, Alessandro Vancheri, Ilaria Ricotti, et al.
ACS Catalysis (2025), pp. 1046-1060
Closed Access
Teresa Benedetta Guerriere, Alessandro Vancheri, Ilaria Ricotti, et al.
ACS Catalysis (2025), pp. 1046-1060
Closed Access
Differential Inhibition by Cenobamate of Canonical Human Nav1.5 Ion Channels and Several Point Mutants
Teodor Asvadur Şulea, Sorin Draga, Maria Mernea, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 1, pp. 358-358
Open Access
Teodor Asvadur Şulea, Sorin Draga, Maria Mernea, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 1, pp. 358-358
Open Access
Repurposing FDA-approved drugs to target G-quadruplexes in breast cancer
Federica Moraca, Valentina Arciuolo, Simona Marzano, et al.
European Journal of Medicinal Chemistry (2025) Vol. 285, pp. 117245-117245
Closed Access
Federica Moraca, Valentina Arciuolo, Simona Marzano, et al.
European Journal of Medicinal Chemistry (2025) Vol. 285, pp. 117245-117245
Closed Access
Iterative acylation on mature lasso peptides by widespread acetyltransferases for lipolasso production
Jiang Xiong, Sheng-Ze Wu, Z. Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Jiang Xiong, Sheng-Ze Wu, Z. Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Plasticity of BioPhi-Driven Humanness Optimization in ScFv-CD99 Binding Affinity Validated Through AlphaFold, HADDOCK, and MD Simulations
Kanokporn Sornsuwan, Thanathat Pamonsupornwichit, On-anong Juntit, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 369-382
Open Access
Kanokporn Sornsuwan, Thanathat Pamonsupornwichit, On-anong Juntit, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 369-382
Open Access
Steroids and steroid-like compounds alter the ion permeability of phospholipid bilayers via distinct interactions with lipids and interfacial water
Morgan Larder, Jackson Crowley, Sheikh I. Hossain, et al.
Physical Chemistry Chemical Physics (2025)
Closed Access
Morgan Larder, Jackson Crowley, Sheikh I. Hossain, et al.
Physical Chemistry Chemical Physics (2025)
Closed Access
