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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Accurate Prediction of Enzyme Thermostabilization with Rosetta Using AlphaFold Ensembles
Francesca Peccati, Sara Alunno-Rufini, Gonzalo Jiménez‐Osés
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 3, pp. 898-909
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Machine Learning-Guided Protein Engineering
Petr Kouba, Pavel Kohout, Faraneh Haddadi, et al.
ACS Catalysis (2023) Vol. 13, Iss. 21, pp. 13863-13895
Open Access | Times Cited: 88
A Protein Misfolding Shaking Amplification-based method for the spontaneous generation of hundreds of bona fide prions
Hasier Eraña, Cristina Sampedro-Torres-Quevedo, Jorge M. Charco, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Engineering thermostability of industrial enzymes for enhanced application performance
Kangjie Xu, Haiyan Fu, Qiming Chen, et al.
International Journal of Biological Macromolecules (2024) Vol. 291, pp. 139067-139067
Closed Access | Times Cited: 6
Design of Cyclic Peptides Targeting Protein–Protein Interactions Using AlphaFold
Takatsugu Kosugi, Masahito Ohue
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 17, pp. 13257-13257
Open Access | Times Cited: 15
Integrative analysis of pathogenic variants in glucose-6-phosphatase based on an AlphaFold2 model
Matt Sinclair, Richard A. Stein, Jonathan H. Sheehan, et al.
PNAS Nexus (2024) Vol. 3, Iss. 2
Open Access | Times Cited: 5
AI-Predicted Protein Deformation Encodes Energy Landscape Perturbation
J. Michael McBride, Tsvi Tlusty
Physical Review Letters (2024) Vol. 133, Iss. 9
Closed Access | Times Cited: 5
Enzyme-Embedded Biodegradable Plastic for Sustainable Applications: Advances, Challenges, and Perspectives
Shengwei Sun
ACS Applied Bio Materials (2025)
Open Access
High-Temperature Catalytic Platform Powered by Thermophilic Microorganisms and Thermozymes
Jiawei Li, Lichao Sun, Yi‐Xin Huo
Synthetic biology and engineering (2025) Vol. 3, Iss. 1, pp. 10001-10001
Closed Access
Investigations on genomic, topological and structural properties of diguanylate cyclases involved in Vibrio cholerae biofilm signalling using in silico techniques: Promising drug targets in combating cholera
Tuhin Manna, Subhamoy Dey, Monalisha Karmakar, et al.
Current Research in Structural Biology (2025), pp. 100166-100166
Open Access
Neural network conditioned to produce thermophilic protein sequences can increase thermal stability
Evan Komp, Christian Phillips, Lauren Lee, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Rosetta Energy Analysis of AlphaFold2 models: Point Mutations and Conformational Ensembles
Richard A. Stein, Hassane S. Mchaourab
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
A comprehensive overview of recent advances in generative models for antibodies
Fanxu Meng, Na Zhou, Hu Guangchun, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2648-2660
Open Access | Times Cited: 3
AlphaFold2 in Molecular Discovery
Ariane Nunes‐Alves, Kenneth M. Merz
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 19, pp. 5947-5949
Closed Access | Times Cited: 8
AI-predicted protein deformation encodes energy landscape perturbation
J. Michael McBride, Tsvi Tlusty
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Metalloenzyme-inspired approach to the design and applications of phosphatase-mimetic nanozymes. Bridging the inorganic and organic worlds
Pavel Janoš, Pavel Janoš
Environmental Science Nano (2024) Vol. 11, Iss. 8, pp. 3268-3285
Closed Access | Times Cited: 2
Application of an alchemical free energy method for the prediction of thermostable DuraPETase variants
Sebastian J. Schreiber, David Gercke, Florian Lenz, et al.
Applied Microbiology and Biotechnology (2024) Vol. 108, Iss. 1
Open Access | Times Cited: 1
A deamination-driven biocatalytic cascade for the synthesis of ribose-1-phosphate
Jonas Motter, Sarah Westarp, Jonas Barsig, et al.
(2024)
Open Access | Times Cited: 1
Guiding protein design choices by per-residue energy breakdown analysis with an interactive web application
Felipe Engelberger, Jonathan D. Zakary, Georg Künze
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 3
Design of Cyclic Peptides Targeting Protein-Protein Interactions using AlphaFold
Takatsugu Kosugi, Masahito Ohue
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
A learnable transition from low temperature to high temperature proteins with neural machine translation
Evan Komp, Christian Phillips, Humood N. Alanzi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Elucidating the Enzymatic Mechanism of Dihydrocoumarin Degradation: Insight into the Functional Evolution of Methyl-Parathion Hydrolase from QM/MM and MM MD Simulations
Yuzhuang Fu, Jun Yu, Fangfang Fan, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 23, pp. 5567-5575
Closed Access
Do Deep Learning Models for Co-Folding Learn the Physics of Protein-Ligand Interactions?
Matthew R. Masters, Amr H. Mahmoud, Markus A. Lill
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Characterization of a novel carboxylesterase from Streptomyces lividans TK24 and site-directed mutagenesis for its thermostability
Jinxin Fang, Li-Hua An, Yu Jiao, et al.
Journal of Bioscience and Bioengineering (2024) Vol. 138, Iss. 3, pp. 181-187
Closed Access
AlphaFold2 Predicts Alternative Conformation Populations in Green Fluorescent Protein Variants
Reyes Núñez‐Franco, M. Milagros Muriel-Olaya, Gonzalo Jiménez‐Osés, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 18, pp. 7135-7140
Open Access
Construction of the Thermostable D-Allulose 3-Epimerase from <i>Arthrobacter globiformis</i> M30 by Protein Engineering Method
Kouhei Ohtani, Kensaku Shimada, Pushpa Kiran Gullapalli, et al.
Journal of Applied Glycoscience (2024) Vol. 71, Iss. 4, pp. 95-102
Open Access
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