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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika Virus
Martín Sóñora, Leandro Martı́nez, Sergio Pantano, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 1, pp. 408-422
Open Access | Times Cited: 23

Showing 23 citing articles:

Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials
Fabian Grünewald, Riccardo Alessandri, P. Kroon, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 88
Pragmatic Coarse-Graining of Proteins: Models and Applications
Luís Borges-Araújo, Ilias Patmanidis, Akhil Pratap Singh, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7112-7135
Open Access | Times Cited: 36
The intricate link between membrane lipid structure and composition and membrane structural properties in bacterial membranes
Tzong-Hsien Lee, Patrick Charchar, Frances Separovic, et al.
Chemical Science (2024) Vol. 15, Iss. 10, pp. 3408-3427
Open Access | Times Cited: 16
CHARMM-GUI Multicomponent Assembler for modeling and simulation of complex multicomponent systems
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
Simulating realistic membrane shapes
Weria Pezeshkian, ‪Siewert J. Marrink
Current Opinion in Cell Biology (2021) Vol. 71, pp. 103-111
Open Access | Times Cited: 67
Understanding Virus Structure and Dynamics through Molecular Simulations
Diane L. Lynch, Ànna Pavlova, Zixing Fan, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 11, pp. 3025-3036
Open Access | Times Cited: 21
The SIRAH force field: A suite for simulations of complex biological systems at the coarse-grained and multiscale levels
Florencia Klein, Martín Sóñora, Lucianna Helene Santos, et al.
Journal of Structural Biology (2023) Vol. 215, Iss. 3, pp. 107985-107985
Open Access | Times Cited: 21
Computational Methods for Modeling Lipid-Mediated Active Pharmaceutical Ingredient Delivery
Markéta Paloncýová, Mariana Valério, Ricardo Nascimento dos Santos, et al.
Molecular Pharmaceutics (2025)
Open Access
Molecular dynamics of the viral life cycle: progress and prospects
Peter Eugene Jones, Carolina Pérez-Segura, Alexander J. Bryer, et al.
Current Opinion in Virology (2021) Vol. 50, pp. 128-138
Open Access | Times Cited: 28
Assembly and Analysis of Cell-Scale Membrane Envelopes
Josh V. Vermaas, Christopher G. Mayne, Eric Shinn, et al.
Journal of Chemical Information and Modeling (2021) Vol. 62, Iss. 3, pp. 602-617
Open Access | Times Cited: 22
Modeling membranes in situ
Chelsea M. Brown, ‪Siewert J. Marrink
Current Opinion in Structural Biology (2024) Vol. 87, pp. 102837-102837
Open Access | Times Cited: 2
Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining
Alexander J. Bryer, Juan S. Rey, Juan R. Perilla
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Application of computational approaches in biomembranes: From structure to function
Jingjing Guo, Yiqiong Bao, Mengrong Li, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2023) Vol. 13, Iss. 6
Closed Access | Times Cited: 7
Mechanisms of allostery at the viral surface through the eyes of molecular simulation
Firdaus Samsudin, Lorena Zuzic, Jan K. Marzinek, et al.
Current Opinion in Structural Biology (2023) Vol. 84, pp. 102761-102761
Closed Access | Times Cited: 6
Fighting viruses with computers, right now
Matías Machado, Sergio Pantano
Current Opinion in Virology (2021) Vol. 48, pp. 91-99
Open Access | Times Cited: 16
CHARMM-GUI Multicomponent Assembler for Modeling and Simulation of Complex Multicomponent Systems
Nathan R. Kern, Jumin Lee, Yeol Kyo Choi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Investigation of the Structure of Full-Length Tau Proteins with Coarse-Grained and All-Atom Molecular Dynamics Simulations
Xibing He, Viet Hoang Man, Jie Gao, et al.
ACS Chemical Neuroscience (2022) Vol. 14, Iss. 2, pp. 209-217
Open Access | Times Cited: 7
The stressed life of a lipid in the Zika virus membrane
Martín Sóñora, Exequiel Barrera, Sergio Pantano
Biochimica et Biophysica Acta (BBA) - Biomembranes (2021) Vol. 1864, Iss. 1, pp. 183804-183804
Open Access | Times Cited: 7
Molecular Modeling in Drug Delivery: Polymer Protective Coatings as Case Study
Alex Bunker, Josef Kehrein
(2024), pp. 104-198
Closed Access
Pouring SIRAH on NAMD
Jorge Cantero, Andrés Ballesteros‐Casallas, Lucianna Helene Santos, et al.
The Journal of Physical Chemistry B (2024)
Closed Access
Multiscale simulations of large complexes in conjunction with cryo-EM analysis
Chenyi Liao, Ye Liu, Dinglin Zhang, et al.
Current Opinion in Structural Biology (2021) Vol. 72, pp. 27-32
Closed Access | Times Cited: 5
Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining
Alexander J. Bryer, Juan R. Perilla
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
Biomembrane simulations: Computational studies of biological membranes
Christian T. K.‐H. Stadtländer
Informatics in Medicine Unlocked (2021) Vol. 26, pp. 100744-100744
Open Access | Times Cited: 1
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