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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predicting RNA secondary structures from sequence and probing data
Ronny Lorenz, Michael T. Wolfinger, Andrea Tanzer, et al.
Methods (2016) Vol. 103, pp. 86-98
Open Access | Times Cited: 105

Showing 1-25 of 105 citing articles:

RNA Structure: Advances and Assessment of 3D Structure Prediction
Zhichao Miao, Éric Westhof
Annual Review of Biophysics (2017) Vol. 46, Iss. 1, pp. 483-503
Open Access | Times Cited: 182
High-throughput determination of RNA structures
Eric J. Strobel, Angela M Yu, Julius B. Lucks
Nature Reviews Genetics (2018) Vol. 19, Iss. 10, pp. 615-634
Open Access | Times Cited: 173
Advances and opportunities in RNA structure experimental determination and computational modeling
Jinsong Zhang, Yuhan Fei, Lei Sun, et al.
Nature Methods (2022) Vol. 19, Iss. 10, pp. 1193-1207
Open Access | Times Cited: 91
Bridging the gap betweenin vitroandin vivoRNA folding
Kathleen A. Leamy, Sarah M. Assmann, David H. Mathews, et al.
Quarterly Reviews of Biophysics (2016) Vol. 49
Open Access | Times Cited: 122
Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules
Li‐Zhen Sun, Dong Zhang, Shi‐Jie Chen
Annual Review of Biophysics (2017) Vol. 46, Iss. 1, pp. 227-246
Open Access | Times Cited: 117
A map of the SARS-CoV-2 RNA structurome
Ryan J. Andrews, Collin A. O’Leary, Van S. Tompkins, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 2
Open Access | Times Cited: 85
Predicting Functional Effects of Synonymous Variants: A Systematic Review and Perspectives
Zishuo Zeng, Yana Bromberg
Frontiers in Genetics (2019) Vol. 10
Open Access | Times Cited: 81
MicroRNA-502-3p regulates GABAergic synapse function in hippocampal neurons
Bhupender Sharma, Melissa M. Torres, Sheryl Rodriguez, et al.
Neural Regeneration Research (2024) Vol. 19, Iss. 12, pp. 2698-2707
Open Access | Times Cited: 9
Recent advances in RNA folding
Jörg Fallmann, Sebastian Will, Jan Engelhardt, et al.
Journal of Biotechnology (2017) Vol. 261, pp. 97-104
Open Access | Times Cited: 85
RNAs, Phase Separation, and Membrane-Less Organelles: Are Post-Transcriptional Modifications Modulating Organelle Dynamics?
Aleksej Drino, Matthias Schaefer
BioEssays (2018) Vol. 40, Iss. 12
Open Access | Times Cited: 68
Computational Methods for the Pharmacogenetic Interpretation of Next Generation Sequencing Data
Yitian Zhou, Kohei Fujikura, Souren Mkrtchian, et al.
Frontiers in Pharmacology (2018) Vol. 9
Open Access | Times Cited: 65
Functional RNA Structures in the 3′UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses
Roman Ochsenreiter, Ivo L. Hofacker, Michael T. Wolfinger
Viruses (2019) Vol. 11, Iss. 3, pp. 298-298
Open Access | Times Cited: 56
How to benchmark RNA secondary structure prediction accuracy
David H. Mathews
Methods (2019) Vol. 162-163, pp. 60-67
Open Access | Times Cited: 55
RNA structure prediction using deep learning — A comprehensive review
Mayank Chaturvedi, Mahmood A. Rashid, Kuldip K. Paliwal
Computers in Biology and Medicine (2025) Vol. 188, pp. 109845-109845
Open Access
Transformers in RNA structure prediction: A review
Mayank Chaturvedi, Mahmood A. Rashid, Kuldip K. Paliwal
Computational and Structural Biotechnology Journal (2025)
Open Access
Hairpin inserts in viral genomes are stable when they conform to the thermodynamic properties of viral RNA substructures
Chanyong Jang, Jason M. Needham, Philip Z. Johnson, et al.
Journal of Virology (2025)
Open Access
The effects of structure on pre-mRNA processing and stability
Rachel Soemedi, Kamil J. Cygan, Christy L. Rhine, et al.
Methods (2017) Vol. 125, pp. 36-44
Open Access | Times Cited: 44
Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions
Krishna Choudhary, Fei Deng, Sharon Aviran
Quantitative Biology (2017) Vol. 5, Iss. 1, pp. 3-24
Open Access | Times Cited: 43
RNA modifications in structure prediction – Status quo and future challenges
Andrea Tanzer, Ivo L. Hofacker, Ronny Lorenz
Methods (2018) Vol. 156, pp. 32-39
Open Access | Times Cited: 41
Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing Data
Sharon Aviran, Danny Incarnato
Journal of Molecular Biology (2022) Vol. 434, Iss. 18, pp. 167635-167635
Open Access | Times Cited: 21
Machine learning modeling of RNA structures: methods, challenges and future perspectives
Kevin Wu, James Zou, Howard Y. Chang
Briefings in Bioinformatics (2023) Vol. 24, Iss. 4
Closed Access | Times Cited: 10
RnaBench: A Comprehensive Library forIn SilicoRNA Modelling
Frederic Runge, Karim Farid, Jörg K. H. Franke, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Frontiers and Challenges of Computing ncRNAs Biogenesis, Function and Modulation
Silvia Rinaldi, Elisabetta Moroni, Riccardo Rozza, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 3, pp. 993-1018
Closed Access | Times Cited: 3
Dawn of the in vivo RNA structurome and interactome
Chun Kit Kwok
Biochemical Society Transactions (2016) Vol. 44, Iss. 5, pp. 1395-1410
Closed Access | Times Cited: 37
Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs
Chun Shen Lim, Chris M. Brown
Frontiers in Microbiology (2018) Vol. 8
Open Access | Times Cited: 33
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