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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Modeling conformational states of proteins with AlphaFold
Davide Sala, Felipe Engelberger, Hassane S. Mchaourab, et al.
Current Opinion in Structural Biology (2023) Vol. 81, pp. 102645-102645
Open Access | Times Cited: 100

Showing 1-25 of 100 citing articles:

From interaction networks to interfaces, scanning intrinsically disordered regions using AlphaFold2
Hélène Bret, Jinmei Gao, Diego Javier Zea, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 40
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins
Vinayak Agarwal, Andrew C. McShan
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 950-959
Closed Access | Times Cited: 19
AlphaFold predictions of fold-switched conformations are driven by structure memorization
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
Molecular basis of proton sensing by G protein-coupled receptors
Matthew K. Howard, Nick Hoppe, Xi‐Ping Huang, et al.
Cell (2025)
Open Access | Times Cited: 1
PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins
Hamidreza Ghafouri, Tamás Lázár, Alessio Del Conte, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D536-D544
Open Access | Times Cited: 22
Fosthiazate, a soil-applied nematicide, induces oxidative stress, neurotoxicity and transcriptome aberrations in earthworm (Eisenia fetida)
Can Wang, Xiangfeng Yao, Xianxu Li, et al.
Journal of Hazardous Materials (2023) Vol. 463, pp. 132865-132865
Closed Access | Times Cited: 20
Deep learning for protein structure prediction and design—progress and applications
Jürgen Jänes, Pedro Beltrão
Molecular Systems Biology (2024) Vol. 20, Iss. 3, pp. 162-169
Open Access | Times Cited: 9
AlphaFold two years on: Validation and impact
Oleg Kovalevskiy, Juan Mateos-García, Kathryn Tunyasuvunakool
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 34
Open Access | Times Cited: 7
Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction
Devlina Chakravarty, Myeongsang Lee, Lauren L. Porter
Current Opinion in Structural Biology (2025) Vol. 90, pp. 102973-102973
Open Access
The Physics-AI Dialogue in Drug Design
Pablo Andrés Vargas-Rosales, Amedeo Caflisch
RSC Medicinal Chemistry (2025)
Open Access
Emerging Approaches to Investigating Functional Protein Dynamics in Modular Redox Enzymes: Nitric Oxide Synthase as a Model System
Ting Jiang, Megan C. Thielges, Changjian Feng
Journal of Biological Chemistry (2025), pp. 108282-108282
Closed Access
Modeling Boltzmann-weighted structural ensembles of proteins using artificial intelligence–based methods
Akashnathan Aranganathan, Xinyu Gu, Dedi Wang, et al.
Current Opinion in Structural Biology (2025) Vol. 91, pp. 103000-103000
Open Access
AlphaFold2 has more to learn about protein energy landscapes
Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 18
Evaluation of AlphaFold Antibody-Antigen Modeling with Implications for Improving Predictive Accuracy
Rui Yin, Brian G. Pierce
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
A Perspective on the Prospective Use of AI in Protein Structure Prediction
Raphaëlle Versini, Sujith Sritharan, Burcu Aykaç Fas, et al.
Journal of Chemical Information and Modeling (2023) Vol. 64, Iss. 1, pp. 26-41
Open Access | Times Cited: 16
From byte to bench to bedside: molecular dynamics simulations and drug discovery
M.W. Ahmed, Alex M. Maldonado, Jacob D. Durrant
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 14
Interpretable Atomistic Prediction and Functional Analysis of Conformational Ensembles and Allosteric States in Protein Kinases Using AlphaFold2 Adaptation with Randomized Sequence Scanning and Local Frustration Profiling
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies
Joseph I. J. Ellaway, Stephen Anyango, Sreenath Nair, et al.
Structural Dynamics (2024) Vol. 11, Iss. 3
Open Access | Times Cited: 5
Integration of a Randomized Sequence Scanning Approach in AlphaFold2 and Local Frustration Profiling of Conformational States Enable Interpretable Atomistic Characterization of Conformational Ensembles and Detection of Hidden Allosteric States in the ABL1 Protein Kinase
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 12, pp. 5317-5336
Closed Access | Times Cited: 5
Advanced AI Applications for Drug Discovery
Bancha Yingngam, Benjabhorn Sethabouppha
Advances in medical technologies and clinical practice book series (2024), pp. 42-86
Closed Access | Times Cited: 4
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15
Andriy Kryshtafovych, G.T. Montelione, Daniel J. Rigden, et al.
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 12, pp. 1903-1911
Open Access | Times Cited: 13
Recent Advances and Challenges in Protein Structure Prediction
Chunxiang Peng, Liang Fang, Yuhao Xia, et al.
Journal of Chemical Information and Modeling (2023) Vol. 64, Iss. 1, pp. 76-95
Closed Access | Times Cited: 13
Allosteric modulation of fluorescence revealed by hydrogen bond dynamics in a genetically encoded maltose biosensor
Melike Berksöz, Canan Atılgan
Proteins Structure Function and Bioinformatics (2024) Vol. 92, Iss. 8, pp. 923-932
Open Access | Times Cited: 4
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT
Jun Ohnuki, Titouan Jaunet‐Lahary, Atsuko Yamashita, et al.
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 3, pp. 725-732
Open Access | Times Cited: 3
Protein Representations: Encoding Biological Information for Machine Learning in Biocatalysis
David Harding-Larsen, Jonathan Funk, Niklas Gesmar Madsen, et al.
(2024)
Open Access | Times Cited: 3
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