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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation
Daniel Osorio, Yan Zhong, Guanxun Li, et al.
Patterns (2022) Vol. 3, Iss. 3, pp. 100434-100434
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models
Feng Ren, Alex Aliper, Jian Chen, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 78
Machine Learning and Deep Learning in Synthetic Biology: Key Architectures, Applications, and Challenges
Manoj Kumar Goshisht
ACS Omega (2024) Vol. 9, Iss. 9, pp. 9921-9945
Open Access | Times Cited: 27
Applications of deep learning in understanding gene regulation
Zhongxiao Li, Elva Gao, Juexiao Zhou, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 1, pp. 100384-100384
Open Access | Times Cited: 29
scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network
Chengyu Li, Xin Shao, Shujing Zhang, et al.
Cell Reports Medicine (2024) Vol. 5, Iss. 6, pp. 101568-101568
Open Access | Times Cited: 10
CTHRC1+ fibroblasts and SPP1+ macrophages synergistically contribute to pro-tumorigenic tumor microenvironment in pancreatic ductal adenocarcinoma
Evan Li, Hoi Ching Cheung, Shuangge Ma
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data
Daniel Osorio, Anna Capasso, S. Gail Eckhardt, et al.
Nature Computational Science (2024) Vol. 4, Iss. 3, pp. 237-250
Open Access | Times Cited: 6
Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks
Yongjian Yang, Guanxun Li, Yan Zhong, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 13, pp. 6578-6592
Open Access | Times Cited: 15
Advances in modeling cellular state dynamics: integrating omics data and predictive techniques
Sungwon Jung
Animal Cells and Systems (2025) Vol. 29, Iss. 1, pp. 72-83
Open Access
Gene function revealed at the moment of sitochastic gene silencing
Shreyan Gupta, James J. Cai
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Balb/c mice are protected from glucose and acute cold intolerance
Marcela R. Simões, Bruna Bombassaro, Ana Luisa Gallo-Ferraz, et al.
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease (2025) Vol. 1871, Iss. 5, pp. 167725-167725
Closed Access
Genetic insights into idiopathic pulmonary fibrosis: a multi-omics approach to identify potential therapeutic targets
Zhuofeng Wen, Wenpeng Liang, Zhongxia Yang, et al.
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
Aregs-IGFBP3-mediated SMC-like cells apoptosis impairs beige adipocytes formation in aged mice
Shifeng Wang, Yuanxu Cui, Limei Wang, et al.
Molecular Metabolism (2025) Vol. 95, pp. 102125-102125
Open Access
Decoding the principle of cell-fate determination for its reverse control
Jong‐Hoon Lee, Namhee Kim, Kwang‐Hyun Cho
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 3
Single-nucleus transcriptome unveils the role of ferroptosis in ischemic stroke
Cheng-Long Shi, Xiuli Han, Jing-Ce Chen, et al.
Heliyon (2024) Vol. 10, Iss. 12, pp. e32727-e32727
Open Access | Times Cited: 3
Artificial intelligence and machine learning applications for cultured meat
Michael E. Todhunter, Sheikh Jubair, Ruchika Verma, et al.
Frontiers in Artificial Intelligence (2024) Vol. 7
Open Access | Times Cited: 3
Inhibition of Crif1 protects fatty acid-induced POMC neuron-like cell-line damage by increasing CPT-1 function
Lara Regina-Ferreira, Fernando Valdivieso‐Rivera, Monara Kaélle Sérvulo Cruz Angelim, et al.
AJP Endocrinology and Metabolism (2024) Vol. 326, Iss. 5, pp. E681-E695
Closed Access | Times Cited: 2
Niclosamide targets the dynamic progression of macrophages for the resolution of endometriosis in a mouse model
Liang Zhao, Mingxin Shi, Sarayut Winuthayanon, et al.
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 12
Controlled noise: evidence of epigenetic regulation of single-cell expression variability
Yan Zhong, Shuaijun Cui, Yongjian Yang, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 2
Identification of Cell Type-Specific Effects of DNMT3A Mutations on Relapse in Acute Myeloid Leukemia
Seo-Gyeong Bae, Hyeoung‐Joon Kim, Mi Yeon Kim, et al.
Molecules and Cells (2023) Vol. 46, Iss. 10, pp. 611-626
Open Access | Times Cited: 4
SinCMat: A single-cell-based method for predicting functional maturation transcription factors
Sybille Barvaux, Satoshi Okawa, Antonio del Sol
Stem Cell Reports (2024) Vol. 19, Iss. 2, pp. 270-284
Open Access | Times Cited: 1
Single-cell transcriptome unveils unique transcriptomic signatures of human organ-specific endothelial cells
Rui‐Ze Niu, Hongyan Xu, Hui Tian, et al.
Basic Research in Cardiology (2024)
Closed Access | Times Cited: 1
Gag‐like proteins: Novel mediators of prenatal alcohol exposure in neural development
Marisa R. Pinson, Dae D. Chung, Amanda H. Mahnke, et al.
Alcoholism Clinical and Experimental Research (2022) Vol. 46, Iss. 4, pp. 556-569
Open Access | Times Cited: 7
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data
Daniel Osorio, Anna Capasso, S. Gail Eckhardt, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Five Years of Gene Networks Modeling in Single-cell RNA-sequencing Studies: Current Approaches and Outstanding Challenges
Samarendra Das, Upendra Kumar Pradhan, N. Shesh
Current Bioinformatics (2022) Vol. 17, Iss. 10, pp. 888-908
Closed Access | Times Cited: 3
Gene Function Revealed at the Moment of Stochastic Gene Silencing
Shreyan Gupta, James J. Cai
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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