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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates
Arthur Declercq, Robbin Bouwmeester, Aurélie Hirschler, et al.
Molecular & Cellular Proteomics (2022) Vol. 21, Iss. 8, pp. 100266-100266
Open Access | Times Cited: 79

Showing 1-25 of 79 citing articles:

Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy
Guangyuan Li, Shweta Mahajan, Siyuan Ma, et al.
Science Translational Medicine (2024) Vol. 16, Iss. 730
Open Access | Times Cited: 26
Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model
David Gomez‐Zepeda, Danielle Arnold-Schild, Julian Beyrle, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 17
Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF
Charlotte Adams, Wassim Gabriel, Kris Laukens, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
MS2Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0
Louise Marie Buur, Arthur Declercq, Marina Strobl, et al.
Journal of Proteome Research (2024) Vol. 23, Iss. 8, pp. 3200-3207
Open Access | Times Cited: 14
Comparative Analysis of Data‐Driven Rescoring Platforms for Improved Peptide Identification in HeLa Digest Samples
Jesús D. Castaño, Francis Beaudry
PROTEOMICS (2025)
Open Access | Times Cited: 1
TIMS2Rescore: A Data Dependent Acquisition-Parallel Accumulation and Serial Fragmentation-Optimized Data-Driven Rescoring Pipeline Based on MS2Rescore
Arthur Declercq, Robbe Devreese, Jonas Scheid, et al.
Journal of Proteome Research (2025)
Open Access | Times Cited: 1
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics
Lei Xin, Rui Qiao, Xin Chen, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 64
OpenProt 2.0 builds a path to the functional characterization of alternative proteins
Sébastien Leblanc, Feriel Yala, Nicolas Provencher, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D522-D528
Open Access | Times Cited: 24
Neoantigen-targeted dendritic cell vaccination in lung cancer patients induces long-lived T cells exhibiting the full differentiation spectrum
Joline Ingels, Laurenz De Cock, Dieter Stevens, et al.
Cell Reports Medicine (2024) Vol. 5, Iss. 5, pp. 101516-101516
Open Access | Times Cited: 8
The Importance of Being Presented: Target Validation by Immunopeptidomics for Epitope-Specific Immunotherapies
Jonas P. Becker, Angelika B. Riemer
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 36
Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry
Aaron Wacholder, Anne‐Ruxandra Carvunis
PLoS Biology (2023) Vol. 21, Iss. 12, pp. e3002409-e3002409
Open Access | Times Cited: 18
Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils
Wout Bittremieux, Lev I. Levitsky, Matteo Pilz, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 2, pp. 625-631
Open Access | Times Cited: 17
A microfluidics-enabled automated workflow of sample preparation for MS-based immunopeptidomics
Xiaokang Li, Hui Song Pak, Florian Huber, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 6, pp. 100479-100479
Open Access | Times Cited: 17
Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery
Charlotte Stutzmann, Jiaxi Peng, Zhaoguan Wu, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 6, pp. 100511-100511
Open Access | Times Cited: 17
Ionmob: a Python package for prediction of peptide collisional cross-section values
David Teschner, David Gomez‐Zepeda, Arthur Declercq, et al.
Bioinformatics (2023) Vol. 39, Iss. 9
Open Access | Times Cited: 17
Updated MS²PIP web server supports cutting-edge proteomics applications
Arthur Declercq, Robbin Bouwmeester, Cristina Chiva, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W338-W342
Open Access | Times Cited: 16
Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors into Peptide Identification
Mostafa Kalhor, Joel Lapin, Mario Picciani, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 7, pp. 100798-100798
Open Access | Times Cited: 7
Koina: Democratizing machine learning for proteomics research
Ludwig Lautenbacher, Kevin Yang, Tobias Kockmann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
ProSIMSIt: The Best of Both Worlds in Data-Driven Rescoring and Identification Transfer
Firas Hamood, Wassim Gabriel, Petra Pfeiffer, et al.
Journal of Proteome Research (2025)
Open Access
The biogenesis of the immunopeptidome
Arie Admon
Seminars in Immunology (2023) Vol. 67, pp. 101766-101766
Open Access | Times Cited: 15
OpenCustomDB: Integration of Unannotated Open Reading Frames and Genetic Variants to Generate More Comprehensive Customized Protein Databases
Noé Guilloy, Marie A. Brunet, Sébastien Leblanc, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 5, pp. 1492-1500
Open Access | Times Cited: 13
Immunopeptidomics for autoimmunity: unlocking the chamber of immune secrets
Sanya Arshad, Benjamin Cameron, Alok V. Joglekar
npj Systems Biology and Applications (2025) Vol. 11, Iss. 1
Open Access
A Scalable, Web-Based Platform for Proteomics Data Processing, Result Storage and Analysis
Markus Schneider, Daniel P. Zolg, Patroklos Samaras, et al.
Journal of Proteome Research (2025)
Open Access
diaPASEF analysis for HLA-I peptides enables quantification of common cancer neoantigens
Denys Oliinyk, Hem R. Gurung, Zhenru Zhou, et al.
Molecular & Cellular Proteomics (2025), pp. 100938-100938
Open Access
PEPSeek-mediated identification of novel epitopes from viral and bacterial pathogens and the impact on host cell immunopeptidomes
John A. Cormican, Lobna Medfai, Magdalena Wawrzyniuk, et al.
Molecular & Cellular Proteomics (2025), pp. 100937-100937
Open Access
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