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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The SIRAH force field: A suite for simulations of complex biological systems at the coarse-grained and multiscale levels
Florencia Klein, Martín Sóñora, Lucianna Helene Santos, et al.
Journal of Structural Biology (2023) Vol. 215, Iss. 3, pp. 107985-107985
Open Access | Times Cited: 21

Showing 21 citing articles:

AmberTools
David A. Case, Hasan Metin Aktulga, Kellon Belfon, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 20, pp. 6183-6191
Open Access | Times Cited: 494
Pragmatic Coarse-Graining of Proteins: Models and Applications
Luís Borges-Araújo, Ilias Patmanidis, Akhil Pratap Singh, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 20, pp. 7112-7135
Open Access | Times Cited: 36
Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis
Abhik Ghosh Moulick, Rutika Patel, Augustine C. Onyema, et al.
The Journal of Chemical Physics (2025) Vol. 162, Iss. 6
Open Access
From complex data to clear insights: visualizing molecular dynamics trajectories
Hayet Belghit, Mariano Spivak, Manuel Dauchez, et al.
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 5
A Practical Guide to All-Atom and Coarse-Grained Molecular Dynamics Simulations Using Amber and Gromacs: A Case Study of Disulfide-Bond Impact on the Intrinsically Disordered Amyloid Beta
Pamela Smardz, Midhun Mohan Anila, R.E. Pawel, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 12, pp. 6698-6698
Open Access | Times Cited: 3
Pathways to a Shiny Future: Building the Foundation for Computational Physical Chemistry and Biophysics in 2050
Denys Biriukov, Robert Vácha
ACS Physical Chemistry Au (2024) Vol. 4, Iss. 4, pp. 302-313
Open Access | Times Cited: 2
SIRAH Late Harvest: Coarse-Grained Models for Protein Glycosylation
Pablo Garay, Matías Machado, Hugo Verli, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 2, pp. 963-976
Open Access | Times Cited: 1
CGeNArate: a sequence-dependent coarse-grained model of DNA for accurate atomistic MD simulations of kb-long duplexes
David Farré-Gil, Juan Pablo Arcon, Charles A. Laughton, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 12, pp. 6791-6801
Open Access | Times Cited: 1
Lipids and proteins: Insights into the dynamics of assembly, recognition, condensate formation. What is still missing?
Pablo G. Argudo
Biointerphases (2024) Vol. 19, Iss. 3
Open Access | Times Cited: 1
Advancing one health vaccination: In silico design and evaluation of a multi-epitope subunit vaccine against Nipah virus for cross-species immunization using immunoinformatics and molecular modeling
Edward C. Banico, Ella Mae Joy S. Sira, Lauren Emily Fajardo, et al.
PLoS ONE (2024) Vol. 19, Iss. 9, pp. e0310703-e0310703
Open Access | Times Cited: 1
Intrinsic disorder in the dynamic evolution of structure, stability, and flexibility of potyviral VLP assemblies: A computational study
Luis F. Pacios, Flora Sánchez, F Ponz
International Journal of Biological Macromolecules (2023) Vol. 254, pp. 127798-127798
Open Access | Times Cited: 3
MODELOS DE INTERACCIONES ATÓMICAS EN MECÁNICA MOLECULAR
Miguel Ángel Díaz, David S. Coll, David Vega
Revista de la Facultad de Ciencias (2024) Vol. 13, Iss. 1, pp. 73-127
Open Access
Exploring the Properties of Curved Lipid Membranes: Comparative Analysis of Atomistic and Coarse-Grained Force Fields
Maria Domańska, Piotr Setny
The Journal of Physical Chemistry B (2024)
Open Access
Exploring protein structural ensembles: Integration of sparse experimental data from electron paramagnetic resonance spectroscopy with molecular modeling methods
Julia Belyaeva, Matthias Elgeti
eLife (2024) Vol. 13
Open Access
Identification of neuronatin as a SERCA2b regulin-like protein and assessment of its aggregation propensity via coarse grained simulations.
Omar Ben Mariem, Lara Coppi, Emma De Fabiani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Pouring SIRAH on NAMD
Jorge Cantero, Andrés Ballesteros‐Casallas, Lucianna Helene Santos, et al.
The Journal of Physical Chemistry B (2024)
Closed Access
Bridging One Health: Computational design of a multi-epitope messenger RNA vaccine for cross-species immunization against Nipah virus
Edward C. Banico, Ella Mae Joy S. Sira, Lauren Emily Fajardo, et al.
International Journal of One Health (2024), pp. 216-229
Open Access
The stability of PCV2 virus-like particles from mammalian cells and challenges for biotechnological applications
Natalia Olivero‐Deibe, Ezequiel N. Frigini, Natàlia Ramos, et al.
Vaccine (2024) Vol. 44, pp. 126549-126549
Closed Access
Protocols for Multi-Scale Molecular Dynamics Simulations in Amber and Gromacs: a Case Study of Intrinsically Disordered Amyloid Beta
Pamela Smardz, Midhun Mohan Anila, Paweł Rogowski, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
The Mechanism of Antimicrobial Small-Cationic Peptides from Coarse-Grained Simulations
Ezequiel N. Frigini, Rodolfo D. Porasso, Tamás Beke‐Somfai, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 21, pp. 6877-6889
Closed Access | Times Cited: 1
Mutations in STARD8 (DLC3) May Cause 46,XY Gonadal Dysgenesis
Dmytro Sirokha, Alexey Rayevsky, O. V. Gorodna, et al.
Sexual Development (2023) Vol. 17, Iss. 4-6, pp. 181-189
Closed Access | Times Cited: 1
Computational structural biology: Evolution of the field
Jodi A. Hadden‐Perilla, Juan R. Perilla
Journal of Structural Biology (2023) Vol. 216, Iss. 3, pp. 108055-108055
Closed Access
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