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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

scEpiTools: a database to comprehensively interrogate analytic tools for single-cell epigenomic data
Zijing Gao, Xiaoyang Chen, Zhen Li, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 51, Iss. 4, pp. 462-465
Open Access | Times Cited: 15

Showing 15 citing articles:

scButterfly: a versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
Yichuan Cao, Xiamiao Zhao, Songming Tang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 12
Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
Zhen Li, Xiaoyang Chen, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1757-1773
Open Access | Times Cited: 21
scCASE: accurate and interpretable enhancement for single-cell chromatin accessibility sequencing data
Songming Tang, Xuejian Cui, Rongxiang Wang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Discrete latent embedding of single-cell chromatin accessibility sequencing data for uncovering cell heterogeneity
Xuejian Cui, Xiaoyang Chen, Zhen Li, et al.
Nature Computational Science (2024) Vol. 4, Iss. 5, pp. 346-359
Closed Access | Times Cited: 6
EpiCarousel: memory- and time-efficient identification of metacells for atlas-level single-cell chromatin accessibility data
Sijie Li, Yuxi Li, Yu Sun, et al.
Bioinformatics (2024) Vol. 40, Iss. 4
Open Access | Times Cited: 4
CASHeart: A database of single cells chromatin accessibility for the human heart
Qun Jiang, Xiaoyang Chen, Zijing Gao, et al.
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access
Graph neural networks for single-cell omics data: a review of approaches and applications
Shiming Li, Heyang Hua, Shengquan Chen
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
Zijing Gao, Qiao Liu, Wanwen Zeng, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 3
EpiGePT: a Pretrained Transformer model for epigenomics
Zijing Gao, Qiao Liu, Wanwen Zeng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Accurate cell type annotation for single‐cell chromatin accessibility data via contrastive learning and reference guidance
Siyu Li, Songming Tang, Yunchang Wang, et al.
Quantitative Biology (2024) Vol. 12, Iss. 1, pp. 85-99
Open Access | Times Cited: 2
scCrab: A Reference-Guided Cancer Cell Identification Method based on Bayesian Neural Networks
Heyang Hua, Wenxin Long, Yan Pan, et al.
Interdisciplinary Sciences Computational Life Sciences (2024)
Closed Access | Times Cited: 2
SCREEN: predicting single-cell gene expression perturbation responses via optimal transport
Haixin Wang, Yunhan Wang, Qun Jiang, et al.
Frontiers of Computer Science (2024) Vol. 18, Iss. 3
Closed Access | Times Cited: 1
OpenAnnotateApi: Python and R packages to efficiently annotate and analyze chromatin accessibility of genomic regions
Zijing Gao, Rui Jiang, Shengquan Chen
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 1
scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
Qun Jiang, Shengquan Chen, Xiaoyang Chen, et al.
Bioinformatics (2024) Vol. 40, Iss. 5
Open Access | Times Cited: 1
Cofea: correlation-based feature selection for single-cell chromatin accessibility data
Keyi Li, Xiaoyang Chen, Shuang Song, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 3
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