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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Computational Methods for Single-Cell Multi-Omics Integration and Alignment
Stefan Stanojevic, Yijun Li, Aleksandar Ristivojevic, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 836-849
Open Access | Times Cited: 39

Showing 1-25 of 39 citing articles:

Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 580
Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
Matthew Brendel, Chang Su, Zilong Bai, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 814-835
Open Access | Times Cited: 43
Multimodal deep learning approaches for single-cell multi-omics data integration
Tasbiraha Athaya, Rony Chowdhury Ripan, Xiaoman Li, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 33
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 10
Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data
Chuxi Xiao, Yixin Chen, Qiuchen Meng, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 9
Paired single-cell multi-omics data integration with Mowgli
Geert-Jan Huizing, Ina Maria Deutschmann, Gabriel Peyré, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 18
Revolutionizing Personalized Medicine: Synergy with Multi-Omics Data Generation, Main Hurdles, and Future Perspectives
G. Molla, Molalegne Bitew
Biomedicines (2024) Vol. 12, Iss. 12, pp. 2750-2750
Open Access | Times Cited: 7
Single-cell RNA-seq data have prevalent blood contamination but can be rescued by Originator, a computational tool separating single-cell RNA-seq by genetic and contextual information
Thatchayut Unjitwattana, Qianhui Huang, Yiwen Yang, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Emerging artificial intelligence applications in Spatial Transcriptomics analysis
Yijun Li, Stefan Stanojevic, Lana X. Garmire
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 2895-2908
Open Access | Times Cited: 25
Artificial Intelligence in Omics
Feng Gao, Kun Huang, Yi Xing
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 811-813
Open Access | Times Cited: 22
scMFG: a single-cell multi-omics integration method based on feature grouping
Li-Tian Ma, Jianwen Liu, Wei Sun, et al.
BMC Genomics (2025) Vol. 26, Iss. 1
Open Access
Single-Cell Transcriptomic Approaches for Decoding Non-Coding RNA Mechanisms in Colorectal Cancer
Mahnoor Gondal, Hafiz Muhammad Umer Farooqi
Non-Coding RNA (2025) Vol. 11, Iss. 2, pp. 24-24
Open Access
The performance of deep generative models for learning joint embeddings of single-cell multi-omics data
Eva Brombacher, Maren Hackenberg, Clemens Kreutz, et al.
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 15
MOINER: A Novel Multiomics Early Integration Framework for Biomedical Classification and Biomarker Discovery
Wei Zhang, Minjie Mou, Wei Hu, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 7, pp. 2720-2732
Closed Access | Times Cited: 2
Unsupervised neural network for single cell Multi-omics INTegration (UMINT): an application to health and disease
Chayan Maitra, Dibyendu Bikash Seal, Vivek Das, et al.
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 6
Organoids as complex (bio)systems
Tiago G. Fernandes
Frontiers in Cell and Developmental Biology (2023) Vol. 11
Open Access | Times Cited: 6
Paired single-cell multi-omics data integration with Mowgli
Geert-Jan Huizing, Ina Maria Deutschmann, Gabriel Peyré, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
scCorrector: a robust method for integrating multi-study single-cell data
Zhen-Hao Guo, Yanbin Wang, Siguo Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 1
Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating
Peng Liu, Yuchen Pan, Hung‐Ching Chang, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access | Times Cited: 1
Benchmarking Computational Integration Methods for Spatial Transcriptomics Data
Yijun Li, Stefan Stanojevic, Bing He, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 7
The performance of deep generative models for learning joint embeddings of single-cell multi-omics data
Eva Brombacher, Maren Hackenberg, Clemens Kreutz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4
Advanced Omics Techniques for Understanding Cochlear Genome, Epigenome, and Transcriptome in Health and Disease
Annamaria Tisi, Sakthimala Palaniappan, Mauro Maccarrone
Biomolecules (2023) Vol. 13, Iss. 10, pp. 1534-1534
Open Access | Times Cited: 2
Linking cells across single-cell modalities by synergistic matching of neighborhood structure
Borislav H. Hristov, Jeffrey A. Bilmes, William Stafford Noble
Bioinformatics (2022) Vol. 38, Iss. Supplement_2, pp. ii148-ii154
Open Access | Times Cited: 3
Genomic data integration tutorial, a plant case study
Emile Mardoc, Mamadou Dia Sow, Sébastien Dejean, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access
Integration of single-cell transcriptome and chromatin accessibility and its application on tumor investigation
Chunyuan Yang, Yan Jin, Yuxin Yin
Life Medicine (2024) Vol. 3, Iss. 2
Open Access
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