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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
Mohammed Alser, Joël Lindegger, Can Fırtına, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 4579-4599
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

Variant calling and benchmarking in an era of complete human genome sequences
Nathan D. Olson, Justin Wagner, Nathan Dwarshuis, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 7, pp. 464-483
Closed Access | Times Cited: 72
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis
Can Fırtına, Jisung Park, Mohammed Alser, et al.
NAR Genomics and Bioinformatics (2023) Vol. 5, Iss. 1
Open Access | Times Cited: 30
RUBICON: a framework for designing efficient deep learning-based genomic basecallers
Gagandeep Singh, Mohammed Alser, Kristof Denolf, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 10
A framework for high-throughput sequence alignment using real processing-in-memory systems
Safaa Diab, Amir Nassereldine, Mohammed Alser, et al.
Bioinformatics (2023) Vol. 39, Iss. 5
Open Access | Times Cited: 20
Trust, Ethics, and User-Centric Design in AI-Integrated Genomics
Faisal Al-Akayleh, Ahmed S.A. Ali Agha
(2024), pp. 1-6
Closed Access | Times Cited: 6
Advances in Whole Genome Sequencing: Methods, Tools, and Applications in Population Genomics
Ying Lü, Mengfei Li, Zhendong Gao, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 1, pp. 372-372
Open Access
Sigmoni: classification of nanopore signal with a compressed pangenome index
Vikram S Shivakumar, Omar Ahmed, Sam Kovaka, et al.
Bioinformatics (2024) Vol. 40, Iss. Supplement_1, pp. i287-i296
Open Access | Times Cited: 4
Taming large-scale genomic analyses via sparsified genomics
Mohammed Alser, Julien Eudine, Onur Mutlu
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
In-Storage Read-Centric Seed Location Filtering Using 3D-NAND Flash for Genome Sequence Analysis
Yan-Zong Zheng, Ming‐Liang Wei, Hsiang-Yun Cheng, et al.
Proceedings of the 28th Asia and South Pacific Design Automation Conference (2025), pp. 1008-1015
Closed Access
CIPHERMATCH: Accelerating Homomorphic Encryption-Based String Matching via Memory-Efficient Data Packing and In-Flash Processing
Mayank Kabra, Rakesh Nadig, Harshita Gupta, et al.
(2025), pp. 111-130
Closed Access
Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs
Joël Lindegger, Damla Senol Cali, Mohammed Alser, et al.
Bioinformatics (2023) Vol. 39, Iss. 5
Open Access | Times Cited: 8
GenArchBench: A genomics benchmark suite for arm HPC processors
Lorién López‐Villellas, Rubén Langarita, Asaf Badouh, et al.
Future Generation Computer Systems (2024) Vol. 157, pp. 313-329
Open Access | Times Cited: 2
TargetCall: eliminating the wasted computation in basecalling via pre-basecalling filtering
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 2
An overlooked phenomenon: complex interactions of potential error sources on the quality of bacterial de novo genome assemblies
Zoltán Rádai, Alex Váradi, Péter Takács, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping
Seongyeon Park, Junguk Hong, Jaeyong Song, et al.
(2024), pp. 431-444
Open Access | Times Cited: 1
BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis
Can Fırtına, Jisung Park, Mohammed Alser, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 7
Invited: Accelerating Genome Analysis via Algorithm-Architecture Co-Design
Onur Mutlu, Can Fırtına
(2023), pp. 1-4
Closed Access | Times Cited: 3
SieveMem: A Computation-in-Memory Architecture for Fast and Accurate Pre-Alignment
Taha Shahroodi, Michael Miao, Mahdi Zahedi, et al.
(2023)
Open Access | Times Cited: 3
RattlesnakeJake: A Fast and Accurate Pre-alignment Filter Suitable for Computation-in-Memory
Taha Shahroodi, Michael Miao, Mahdi Zahedi, et al.
Lecture notes in computer science (2023), pp. 209-221
Closed Access | Times Cited: 3
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-efficient Genome Analysis
Can Fırtına, Kamlesh Pillai, Gurpreet S. Kalsi, et al.
ACM Transactions on Architecture and Code Optimization (2023) Vol. 21, Iss. 1, pp. 1-29
Open Access | Times Cited: 3
A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers
Gagandeep Singh, Mohammed Alser, Kristof Denolf, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4
Sigmoni: classification of nanopore signal with a compressed pangenome index
Vikram S. Shivakumar, Omar Ahmed, Sam Kovaka, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 3
BIMSA: Accelerating Long Sequence Alignment Using Processing-In-Memory
Alejandro Alonso-Marín, Ivan J. Fernandez, Quim Aguado-Puig, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
RapidGKC: GPU-Accelerated K-Mer Counting
Yiran Cheng, Xibo Sun, Qiong Luo
2022 IEEE 38th International Conference on Data Engineering (ICDE) (2024), pp. 3810-3822
Closed Access
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