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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Automatic cell type identification methods for single-cell RNA sequencing
Bingbing Xie, Qin Jiang, Antonio Mora, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5874-5887
Open Access | Times Cited: 49

Showing 1-25 of 49 citing articles:

Transformer for one stop interpretable cell type annotation
Jiawei Chen, Hao Xu, Wanyu Tao, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 106
Mapping human adult hippocampal neurogenesis with single-cell transcriptomics: Reconciling controversy or fueling the debate?
Giorgia Tosoni, Dilara Ayyildiz, Julien Bryois, et al.
Neuron (2023) Vol. 111, Iss. 11, pp. 1714-1731.e3
Open Access | Times Cited: 45
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Carolin Grones, Thomas Eekhout, Dongbo Shi, et al.
The Plant Cell (2024) Vol. 36, Iss. 4, pp. 812-828
Open Access | Times Cited: 25
Multiscale topology classifies cells in subcellular spatial transcriptomics
Katherine Benjamin, Aneesha Bhandari, Jessica D. Kepple, et al.
Nature (2024) Vol. 630, Iss. 8018, pp. 943-949
Open Access | Times Cited: 17
Pan-cancer classification of single cells in the tumour microenvironment
Ido Nofech-Mozes, David Soave, Philip Awadalla, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 31
Tribus: Semi-automated discovery of cell identities and phenotypes from multiplexed imaging and proteomic data
Ziqi Kang, Angela E. Szabó, Teodora Farago, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Coding and Non-Coding Transcriptomic Landscape of Aortic Complications in Marfan Syndrome
Nathasha Samali Udugampolage, S. L. FROLOVA, Jacopo Taurino, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 13, pp. 7367-7367
Open Access | Times Cited: 4
XgCPred: Cell type classification using XGBoost-CNN integration and exploiting gene expression imaging in single-cell RNAseq data
Anas Abu-Doleh, Amjed Al Fahoum
Computers in Biology and Medicine (2024) Vol. 181, pp. 109066-109066
Closed Access | Times Cited: 4
Mapping Cell Identity from scRNA-seq: a primer on computational methods
Daniele Traversa, Matteo Chiara
Computational and Structural Biotechnology Journal (2025)
Open Access
Self-Supervised Graph Representation Learning for Single-Cell Classification
Qiguo Dai, Wuhao Liu, Xianhai Yu, et al.
Interdisciplinary Sciences Computational Life Sciences (2025)
Closed Access
TransAnno-Net: A Deep Learning Framework for Accurate Cell Type Annotation of Mouse Lung Tissue Using Self-supervised Pretraining
Qing Zhang, Xiaoxiao Wu, Xiang Li, et al.
Computer Methods and Programs in Biomedicine (2025), pp. 108809-108809
Closed Access
A scalable sparse neural network framework for rare cell type annotation of single-cell transcriptome data
Yuqi Cheng, Xingyu Fan, Jianing Zhang, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 10
Single-cell and single-nucleus RNA-sequencing from paired normal-adenocarcinoma lung samples provide both common and discordant biological insights
Sébastien Renaut, Victoria Saavedra Armero, Dominique K. Boudreau, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Single-cell and single-nucleus RNA-sequencing from paired normal-adenocarcinoma lung samples provide both common and discordant biological insights
Sébastien Renaut, Victoria Saavedra Armero, Dominique K. Boudreau, et al.
PLoS Genetics (2024) Vol. 20, Iss. 5, pp. e1011301-e1011301
Open Access | Times Cited: 3
Single-cell RNA-sequencing analysis reveals α-syn induced astrocyte-neuron crosstalk-mediated neurotoxicity
Kuan Li, Haosen Ling, Weimin Huang, et al.
International Immunopharmacology (2024) Vol. 139, pp. 112676-112676
Closed Access | Times Cited: 3
Leveraging gene correlations in single cell transcriptomic data
Kai Silkwood, Emmanuel Dollinger, Joshua Gervin, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
HyGAnno: hybrid graph neural network–based cell type annotation for single-cell ATAC sequencing data
Weihang Zhang, Yang Cui, Bowen Liu, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 2
Artificial intelligence in cell annotation for high-resolution RNA sequencing data
Naiqiao Hou, Xinrui Lin, Li Lin, et al.
TrAC Trends in Analytical Chemistry (2024) Vol. 178, pp. 117818-117818
Closed Access | Times Cited: 2
A Comparison of Cell-Cell Interaction Prediction Tools Based on scRNA-seq Data
Zihong Xie, Xuri Li, Antonio Mora
Biomolecules (2023) Vol. 13, Iss. 8, pp. 1211-1211
Open Access | Times Cited: 6
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-sequencing
Joongho Lee, Min‐Soo Kim, Keunsoo Kang, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 2
Open Access | Times Cited: 5
Cell-type annotation with accurate unseen cell-type identification using multiple references
Yi-Xuan Xiong, Meng-Guo Wang, Luonan Chen, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 6, pp. e1011261-e1011261
Open Access | Times Cited: 4
Partial label learning for automated classification of single-cell transcriptomic profiles
Malek Senoussi, Thierry Artières, Paul Villoutreix
PLoS Computational Biology (2024) Vol. 20, Iss. 4, pp. e1012006-e1012006
Open Access | Times Cited: 1
Leveraging Multi-tissue, Single-Cell Atlases as Tools to Elucidate Shared Mechanisms of Immune-Mediated Inflammatory Diseases
Anthony K. McLean, Gary Reynolds, Arthur G. Pratt
(2024)
Open Access | Times Cited: 1
Statistically principled feature selection for single cell transcriptomics
Emmanuel Dollinger, Kai Silkwood, Scott X. Atwood, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
ImmCluster: an ensemble resource for immunology cell type clustering and annotations in normal and cancerous tissues
Tiantongfei Jiang, Weiwei Zhou, Qi Sheng, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D1325-D1332
Open Access | Times Cited: 7
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