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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Concepts in Boolean network modeling: What do they all mean?
Julian Schwab, Silke D. Kühlwein, Nensi Ikonomi, et al.
Computational and Structural Biotechnology Journal (2020) Vol. 18, pp. 571-582
Open Access | Times Cited: 192

Showing 1-25 of 192 citing articles:

A meta-analysis of Boolean network models reveals design principles of gene regulatory networks
Claus Kadelka, Taras-Michael Butrie, Evan Hilton, et al.
Science Advances (2024) Vol. 10, Iss. 2
Open Access | Times Cited: 19
Systems approaches to investigate the role of NF-κB signaling in aging
Masatoshi Haga, Mariko Okada
Biochemical Journal (2022) Vol. 479, Iss. 2, pp. 161-183
Open Access | Times Cited: 43
Boolean modelling as a logic-based dynamic approach in systems medicine
Ahmed Abdelmonem Hemedan, Anna Niarakis, Reinhard Schneider, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3161-3172
Open Access | Times Cited: 38
A review of dynamical systems approaches for the detection of chaotic attractors in cancer networks
Abicumaran Uthamacumaran
Patterns (2021) Vol. 2, Iss. 4, pp. 100226-100226
Open Access | Times Cited: 50
Multiscale model of the different modes of cancer cell invasion
Marco Ruscone, Arnau Montagud, Philippe Chavrier, et al.
Bioinformatics (2023) Vol. 39, Iss. 6
Open Access | Times Cited: 16
Canalization reduces the nonlinearity of regulation in biological networks
Claus Kadelka, David Murrugarra
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 5
Operating principles of interconnected feedback loops driving cell fate transitions
Mubasher Rashid, Abhiram Hegade
npj Systems Biology and Applications (2025) Vol. 11, Iss. 1
Open Access
Challenges and opportunities for digital twins in precision medicine from a complex systems perspective
Manlio De Domenico, Luca Allegri, Guido Caldarelli, et al.
npj Digital Medicine (2025) Vol. 8, Iss. 1
Open Access
In-silico tool based on Boolean networks and meshless simulations for prediction of reaction and transport mechanisms in the systemic administration of chemotherapeutic drugs
Fabián Mauricio Vélez Salazar, Iván David Patiño Arcila
PLoS ONE (2025) Vol. 20, Iss. 2, pp. e0315194-e0315194
Open Access
Towards DNA-damage induced autophagy: A Boolean model of p53-induced cell fate mechanisms
Shantanu Gupta, Daner A. Silveira, José C. M. Mombach
DNA repair (2020) Vol. 96, pp. 102971-102971
Closed Access | Times Cited: 48
Reconstructing Boolean network ensembles from single-cell data for unraveling dynamics in the aging of human hematopoietic stem cells
Julian Schwab, Nensi Ikonomi, Silke D Werle, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5321-5332
Open Access | Times Cited: 36
Dynamical Analysis of a Boolean Network Model of the Oncogene Role of lncRNA ANRIL and lncRNA UFC1 in Non-Small Cell Lung Cancer
Shantanu Gupta, Ronaldo F. Hashimoto
Biomolecules (2022) Vol. 12, Iss. 3, pp. 420-420
Open Access | Times Cited: 23
Analytical approach of synchronous and asynchronous update schemes applied to solving biological Boolean networks
Antonio Bensussen, J. Arturo Arciniega-González, Elena Álvarez‐Buylla, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Vitamin D Decreases Susceptibility of CD4+ T Cells to HIV Infection by Reducing AKT Phosphorylation and Glucose Uptake: A Bioinformatic and In Vitro Approach
John D. Loaiza, José A. Gómez, Daniel Muñoz-Escudero, et al.
Biomolecules (2025) Vol. 15, Iss. 3, pp. 432-432
Open Access
An engineered protein-phosphorylation toggle network with implications for endogenous network discovery
Deepak Mishra, Tristan Bepler, Brian Teague, et al.
Science (2021) Vol. 373, Iss. 6550
Open Access | Times Cited: 30
Boolean dynamic modeling of cancer signaling networks: Prognosis, progression, and therapeutics
Shubhank Sherekar, Ganesh A. Viswanathan
Computational and Systems Oncology (2021) Vol. 1, Iss. 2
Open Access | Times Cited: 29
A Machine Learning Approach to Simulate Gene Expression and Infer Gene Regulatory Networks
Francesco Zito, Vincenzo Cutello, Mario Pavone
Entropy (2023) Vol. 25, Iss. 8, pp. 1214-1214
Open Access | Times Cited: 10
Metabolic reprogramming and signalling cross-talks in tumour–immune interaction: a system-level exploration
Mudita Shukla, Rupa Bhowmick, Piyali Ganguli, et al.
Royal Society Open Science (2024) Vol. 11, Iss. 3
Open Access | Times Cited: 3
A practical guide to mechanistic systems modeling in biology using a logic-based approach
Anna Niarakis, Tomáš Helikar
Briefings in Bioinformatics (2020) Vol. 22, Iss. 4
Open Access | Times Cited: 28
Modularity of biological systems: a link between structure and function
Claus Kadelka, Matthew T. Wheeler, Alan Veliz‐Cuba, et al.
Journal of The Royal Society Interface (2023) Vol. 20, Iss. 207
Open Access | Times Cited: 9
Optimizing therapeutic targets for breast cancer using boolean network models
Domenico Sgariglia, Flávia Raquel Gonçalves Carneiro, Luis Alfredo Vidal de Carvalho, et al.
Computational Biology and Chemistry (2024) Vol. 109, pp. 108022-108022
Open Access | Times Cited: 3
Text Mining to Understand Disease-Causing Gene Variants
Leena Nezamuldeen, M. Saleet Jafri
Knowledge (2024) Vol. 4, Iss. 3, pp. 422-443
Open Access | Times Cited: 3
Awakening the HSC: Dynamic Modeling of HSC Maintenance Unravels Regulation of the TP53 Pathway and Quiescence
Nensi Ikonomi, Silke D. Kühlwein, Julian Schwab, et al.
Frontiers in Physiology (2020) Vol. 11
Open Access | Times Cited: 24
Challenges and opportunities in network-based solutions for biological questions
Margaret Guo, Daniel N. Sosa, Russ B. Altman
Briefings in Bioinformatics (2021) Vol. 23, Iss. 1
Open Access | Times Cited: 20
Network analysis reveals that the tumor suppressor lncRNA GAS5 acts as a double-edged sword in response to DNA damage in gastric cancer
Shantanu Gupta, Pritam Kumar Panda, Wei Luo, et al.
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 14
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