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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Advances in constraint-based modelling of microbial communities
Almut Heinken, Arianna Basile, Ines Thiele
Current Opinion in Systems Biology (2021) Vol. 27, pp. 100346-100346
Open Access | Times Cited: 61

Showing 1-25 of 61 citing articles:

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
Almut Heinken, Johannes Hertel, Geeta Acharya, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 9, pp. 1320-1331
Open Access | Times Cited: 162
Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities
Guido Zampieri, Stefano Campanaro, Claudio Angione, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 1, pp. 100383-100383
Open Access | Times Cited: 42
Impact of Contaminants on Microbiota: Linking the Gut–Brain Axis with Neurotoxicity
Jordina Balaguer-Trias, Deepika Deepika, Marta Schuhmacher, et al.
International Journal of Environmental Research and Public Health (2022) Vol. 19, Iss. 3, pp. 1368-1368
Open Access | Times Cited: 56
Microbiome Modelling Toolbox 2.0: efficient, tractable modelling of microbiome communities
Almut Heinken, Ines Thiele
Bioinformatics (2022) Vol. 38, Iss. 8, pp. 2367-2368
Open Access | Times Cited: 40
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011363-e1011363
Open Access | Times Cited: 25
Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta
Cecilia Noecker, Juan M. Sánchez, Jordan E. Bisanz, et al.
PLoS Biology (2023) Vol. 21, Iss. 5, pp. e3002125-e3002125
Open Access | Times Cited: 22
Modeling Microbial Community Networks: Methods and Tools for Studying Microbial Interactions
Shanchana Srinivasan, Apoorva Jnana, Thokur Sreepathy Murali
Microbial Ecology (2024) Vol. 87, Iss. 1
Open Access | Times Cited: 13
Life at the borderlands: microbiomes of interfaces critical to One Health
Simon R. Law, Falko Mathes, Amy M. Paten, et al.
FEMS Microbiology Reviews (2024) Vol. 48, Iss. 2
Open Access | Times Cited: 9
Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches
Merve Atasoy, William T. Scott, Alberte Regueira, et al.
Biotechnology Advances (2024) Vol. 73, pp. 108363-108363
Open Access | Times Cited: 8
Genome-Scale Metabolic Modeling of the Human Microbiome in the Era of Personalized Medicine
Almut Heinken, Arianna Basile, Johannes Hertel, et al.
Annual Review of Microbiology (2021) Vol. 75, Iss. 1, pp. 199-222
Open Access | Times Cited: 49
Advances in flux balance analysis by integrating machine learning and mechanism-based models
Ankur Sahu, Mary Ann Blätke, Jędrzej Szymański, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 4626-4640
Open Access | Times Cited: 46
Toward merging bottom–up and top–down model-based designing of synthetic microbial communities
David San León, Juan Nogales
Current Opinion in Microbiology (2022) Vol. 69, pp. 102169-102169
Closed Access | Times Cited: 36
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics
Arianna Basile, Almut Heinken, Johannes Hertel, et al.
Gut Microbes (2023) Vol. 15, Iss. 1
Open Access | Times Cited: 20
Emerging methods for genome-scale metabolic modeling of microbial communities
Chaimaa Tarzi, Guido Zampieri, Neil T. Sullivan, et al.
Trends in Endocrinology and Metabolism (2024) Vol. 35, Iss. 6, pp. 533-548
Open Access | Times Cited: 7
The optimization of microbial functions through rational environmental manipulations
Álvaro Sánchez, Andrea Arrabal, Magdalena San Román, et al.
Molecular Microbiology (2024) Vol. 122, Iss. 3, pp. 294-303
Open Access | Times Cited: 6
PyCoMo: a python package for community metabolic model creation and analysis
Michael Predl, Marianne Mießkes, Thomas Rattei, et al.
Bioinformatics (2024)
Open Access | Times Cited: 6
Metabolic model-based ecological modeling for probiotic design
James D. Brunner, Nicholas Chia
eLife (2024) Vol. 13
Open Access | Times Cited: 5
Characterising Measures of Functional Redundancy in, Microbiome Communities via Relative Entropy
Daniel Fässler, Almut Heinken, Johannes Hertel
Computational and Structural Biotechnology Journal (2025)
Open Access
Metabolic modelling reveals the aging-associated decline of host–microbiome metabolic interactions in mice
Lena Best, Thomas Dost, Daniela Esser, et al.
Nature Microbiology (2025)
Open Access
Advances in synthetic microbial ecosystems approach for studying ecological interactions and their influencing factors
Wei Jiang, Sumeng Wang, Fei Gu, et al.
Engineering Microbiology (2025), pp. 100205-100205
Open Access
Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity
Honoka Aida, Takamasa Hashizume, Kazuha Ashino, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 21
Metabolic models of human gut microbiota: Advances and challenges
Daniel Garza, Didier Gonze, Haris Zafeiropoulos, et al.
Cell Systems (2023) Vol. 14, Iss. 2, pp. 109-121
Open Access | Times Cited: 11
Modelling of microbial interactions in anaerobic digestion: from black to glass box
Arianna Basile, Guido Zampieri, Adam Kovalovszki, et al.
Current Opinion in Microbiology (2023) Vol. 75, pp. 102363-102363
Open Access | Times Cited: 11
Recent advances in experimental design of synthetic microbial communities for biocontrol application
Bappa Karmakar, Dwipendra Thakuria, Ramie H. Begum, et al.
BioControl (2025)
Closed Access
A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites
Almut Heinken, Timothy Otto Hulshof, Bram Nap, et al.
Cell Systems (2025) Vol. 16, Iss. 2, pp. 101196-101196
Open Access
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