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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees
Wuming Gong, Alejandro Granados, Jingyuan Hu, et al.
Cell Systems (2021) Vol. 12, Iss. 8, pp. 810-826.e4
Open Access | Times Cited: 51

Showing 1-25 of 51 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 506
A time-resolved, multi-symbol molecular recorder via sequential genome editing
Junhong Choi, Wei Chen, Anna Minkina, et al.
Nature (2022) Vol. 608, Iss. 7921, pp. 98-107
Open Access | Times Cited: 114
Connecting past and present: single-cell lineage tracing
Cheng Chen, Yuanxin Liao, Guangdun Peng
Protein & Cell (2022) Vol. 13, Iss. 11, pp. 790-807
Open Access | Times Cited: 55
PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes
Kun Wang, Liangzhen Hou, Xin Wang, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 5, pp. 778-789
Open Access | Times Cited: 31
Reconstructing cell histories in space with image-readable base editor recording
Duncan M. Chadly, Kirsten L. Frieda, Gui Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
A Bayesian phylodynamic inference framework for single-cell CRISPR/Cas9 lineage tracing barcode data with dependent target sites
Antoine Zwaans, Sophie Seidel, Marc Manceau, et al.
Philosophical Transactions of the Royal Society B Biological Sciences (2025) Vol. 380, Iss. 1919
Open Access | Times Cited: 1
Startle: A star homoplasy approach for CRISPR-Cas9 lineage tracing
Palash Sashittal, Henri Schmidt, Michelle M. Chan, et al.
Cell Systems (2023) Vol. 14, Iss. 12, pp. 1113-1121.e9
Open Access | Times Cited: 15
Mapping lineage-traced cells across time points with moslin
Marius Lange, Zoe Piran, Michal Klein, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
Quantitative fate mapping: A general framework for analyzing progenitor state dynamics via retrospective lineage barcoding
Weixiang Fang, Claire Bell, Abel Sapirstein, et al.
Cell (2022) Vol. 185, Iss. 24, pp. 4604-4620.e32
Open Access | Times Cited: 21
TiDeTree: a Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data
Sophie Seidel, Tanja Stadler
Proceedings of the Royal Society B Biological Sciences (2022) Vol. 289, Iss. 1986
Open Access | Times Cited: 19
New Tools for Lineage Tracing in Cancer In Vivo
Matthew G. Jones, Dian Yang, Jonathan S. Weissman
Annual Review of Cancer Biology (2023) Vol. 7, Iss. 1, pp. 111-129
Closed Access | Times Cited: 11
Computational Methods for Lineage Reconstruction
Irepan Salvador‐Martínez
Methods in molecular biology (2025), pp. 355-373
Closed Access
Bayesian Phylogenetic Lineage Reconstruction with Loss of Heterozygosity Mutations Derived from Single-Cell RNA Sequencing
Donovan J. Anderson, Marshall S. Horwitz
Methods in molecular biology (2025), pp. 1-22
Closed Access
Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data
J. P. Dai, Erin K. Molloy
Lecture notes in computer science (2025), pp. 118-133
Closed Access
Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR
Wuming Gong, Hyunwoo J. Kim, Daniel J. Garry, et al.
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 16
Comprehensive spatiotemporal mapping of single-cell lineages in developing mouse brain by CRISPR-based barcoding
L. Xie, Hengxin Liu, Zhiwen You, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1244-1255
Closed Access | Times Cited: 9
LinRace: cell division history reconstruction of single cells using paired lineage barcode and gene expression data
Xinhai Pan, Hechen Li, Pranav Putta, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 7
Single-cell lineage tracing approaches to track kidney cell development and maintenance
Baul Yoon, Hayoung Kim, Su Woong Jung, et al.
Kidney International (2024) Vol. 105, Iss. 6, pp. 1186-1199
Closed Access | Times Cited: 2
LINEAGE: Label-free identification of endogenous informative single-cell mitochondrial RNA mutation for lineage analysis
Li Lin, Yufeng Zhang, Weizhou Qian, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 5
Open Access | Times Cited: 11
TedSim: temporal dynamics simulation of single-cell RNA sequencing data and cell division history
Xinhai Pan, Hechen Li, Xiuwei Zhang
Nucleic Acids Research (2022) Vol. 50, Iss. 8, pp. 4272-4288
Open Access | Times Cited: 11
Novel metrics reveal new structure and unappreciated heterogeneity in Caenorhabditis elegans development
Gunalan Natesan, Timothy Hamilton, Eric J. Deeds, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 12, pp. e1011733-e1011733
Open Access | Times Cited: 6
Inferring cell differentiation maps from lineage tracing data
Palash Sashittal, Richard Zhang, Benjamin K. Law, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis
Matthew G. Jones, Dawei Sun, Kyung Hoi Min, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Reconstructing cell lineage trees with genomic barcoding: approaches and applications
Zizhang Li, Wenjing Yang, Peng Wu, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 51, Iss. 1, pp. 35-47
Open Access | Times Cited: 6
Mapping lineage-traced cells across time points with moslin
Marius Lange, Zoe Piran, Michal Klein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
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