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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors
Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner
Cell Systems (2019) Vol. 8, Iss. 4, pp. 329-337.e4
Open Access | Times Cited: 2543

Showing 1-25 of 2543 citing articles:

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
Samuel L. Wolock, Romain Lopez, Allon M. Klein
Cell Systems (2019) Vol. 8, Iss. 4, pp. 281-291.e9
Open Access | Times Cited: 1744
Current best practices in single‐cell RNA‐seq analysis: a tutorial
Malte D. Luecken, Fabian J. Theis
Molecular Systems Biology (2019) Vol. 15, Iss. 6
Open Access | Times Cited: 1658
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
David H. Brann, Tatsuya Tsukahara, Caleb Weinreb, et al.
Science Advances (2020) Vol. 6, Iss. 31
Open Access | Times Cited: 1118
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, et al.
Nature Genetics (2021) Vol. 53, Iss. 3, pp. 403-411
Open Access | Times Cited: 907
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Zizhen Yao, Cindy T. J. van Velthoven, Thuc Nghi Nguyen, et al.
Cell (2021) Vol. 184, Iss. 12, pp. 3222-3241.e26
Open Access | Times Cited: 755
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
Michaela Asp, Stefania Giacomello, Ludvig Larsson, et al.
Cell (2019) Vol. 179, Iss. 7, pp. 1647-1660.e19
Open Access | Times Cited: 605
Single-cell multi-omics analysis of the immune response in COVID-19
Emily Stephenson, Gary Reynolds, Rachel A. Botting, et al.
Nature Medicine (2021) Vol. 27, Iss. 5, pp. 904-916
Open Access | Times Cited: 595
MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Christopher S. McGinnis, David M. Patterson, Juliane Winkler, et al.
Nature Methods (2019) Vol. 16, Iss. 7, pp. 619-626
Open Access | Times Cited: 552
A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling
Junbin Qian, Siel Olbrecht, Bram Boeckx, et al.
Cell Research (2020) Vol. 30, Iss. 9, pp. 745-762
Open Access | Times Cited: 546
Dysregulation of brain and choroid plexus cell types in severe COVID-19
Andrew C. Yang, Fabian Kern, Patricia Morán Losada, et al.
Nature (2021) Vol. 595, Iss. 7868, pp. 565-571
Open Access | Times Cited: 511
Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing
Ashley Maynard, Caroline E. McCoach, Julia Rotow, et al.
Cell (2020) Vol. 182, Iss. 5, pp. 1232-1251.e22
Open Access | Times Cited: 500
A human brain vascular atlas reveals diverse mediators of Alzheimer’s risk
Andrew C. Yang, Ryan T. Vest, Fabian Kern, et al.
Nature (2022) Vol. 603, Iss. 7903, pp. 885-892
Open Access | Times Cited: 468
Doublet identification in single-cell sequencing data using scDblFinder
Pierre‐Luc Germain, Aaron T. L. Lun, Will Macnair, et al.
F1000Research (2021) Vol. 10, pp. 979-979
Closed Access | Times Cited: 402
The Human and Mouse Enteric Nervous System at Single-Cell Resolution
Eugene Drokhlyansky, Christopher S. Smillie, Nicholas Van Wittenberghe, et al.
Cell (2020) Vol. 182, Iss. 6, pp. 1606-1622.e23
Open Access | Times Cited: 398
Single-cell transcriptomic atlas of the human endometrium during the menstrual cycle
Wanxin Wang, Felipe Vilella, Pilar Alamá, et al.
Nature Medicine (2020) Vol. 26, Iss. 10, pp. 1644-1653
Closed Access | Times Cited: 395
Single-cell RNA landscape of intratumoral heterogeneity and immunosuppressive microenvironment in advanced osteosarcoma
Yan Zhou, Yang Dong, Qingcheng Yang, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 387
Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq
Dylan Kotliar, Adrian Veres, M. Aurel Nagy, et al.
eLife (2019) Vol. 8
Open Access | Times Cited: 372
Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level
Yingcheng Wu, Shuaixi Yang, Jiaqiang Ma, et al.
Cancer Discovery (2021) Vol. 12, Iss. 1, pp. 134-153
Open Access | Times Cited: 367
Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy
Adrienne Luoma, Shengbao Suo, Hannah L. Williams, et al.
Cell (2020) Vol. 182, Iss. 3, pp. 655-671.e22
Open Access | Times Cited: 364
Single-cell analysis reveals new evolutionary complexity in uveal melanoma
Michael Durante, Daniel A. Rodriguez, Stefan Kurtenbach, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 355
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, et al.
Nature (2023) Vol. 624, Iss. 7991, pp. 317-332
Open Access | Times Cited: 326
Discriminating mild from critical COVID-19 by innate and adaptive immune single-cell profiling of bronchoalveolar lavages
Els Wauters, Pierre Van Mol, Abhishek D. Garg, et al.
Cell Research (2021) Vol. 31, Iss. 3, pp. 272-290
Open Access | Times Cited: 319
Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney
Yoshiharu Muto, Parker C. Wilson, Nicolas Ledru, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 315
Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
Alexandro E. Trevino, Fabian Müller, Jimena Andersen, et al.
Cell (2021) Vol. 184, Iss. 19, pp. 5053-5069.e23
Open Access | Times Cited: 314
Decontamination of ambient RNA in single-cell RNA-seq with DecontX
Shiyi Yang, Sean Corbett, Yusuke Koga, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 312
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