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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Automatic cell-type harmonization and integration across Human Cell Atlas datasets
Chuan Xu, Martin Prete, Simone Webb, et al.
Cell (2023) Vol. 186, Iss. 26, pp. 5876-5891.e20
Open Access | Times Cited: 68

Showing 1-25 of 68 citing articles:

A comparison of marker gene selection methods for single-cell RNA sequencing data
Jeffrey M. Pullin, Davis J. McCarthy
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 36
A single-cell atlas enables mapping of homeostatic cellular shifts in the adult human breast
Austin D. Reed, Sara Pensa, Adi Steif, et al.
Nature Genetics (2024) Vol. 56, Iss. 4, pp. 652-662
Open Access | Times Cited: 31
Generation of human cerebral organoids with a structured outer subventricular zone
Ryan Walsh, Raffaele Luongo, Elisa Giacomelli, et al.
Cell Reports (2024) Vol. 43, Iss. 4, pp. 114031-114031
Open Access | Times Cited: 17
Human subcutaneous and visceral adipocyte atlases uncover classical and nonclassical adipocytes and depot-specific patterns
Or Lazarescu, Maya Ziv-Agam, Yulia Haim, et al.
Nature Genetics (2025)
Open Access | Times Cited: 2
Single-cell RNA sequencing of human tissue supports successful drug targets
Emma Dann, Erin Teeple, Rasa Elmentaite, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 10
Contrasting cytotoxic and regulatory T cell responses underlying distinct clinical outcomes to anti-PD-1 plus lenvatinib therapy in cancer
Xinyi Guo, Hu Nie, Wenwen Zhang, et al.
Cancer Cell (2025)
Closed Access | Times Cited: 1
scCobra allows contrastive cell embedding learning with domain adaptation for single cell data integration and harmonization
Bowen Zhao, Kailu Song, Dong‐Qing Wei, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access | Times Cited: 1
Cellular blueprint of healthy and diseased human epiglottis and subglottis—a study of the Canadian Airways Research (CARE) group
Peter YF. Zeng, R. Jun Lin, Kevin Fung, et al.
EBioMedicine (2025) Vol. 114, pp. 105631-105631
Closed Access | Times Cited: 1
Aging activates escape of the silent X chromosome in the female mouse hippocampus
Margaret Gadek, Cayce K. Shaw, Samira Abdulai-Saiku, et al.
Science Advances (2025) Vol. 11, Iss. 10
Open Access | Times Cited: 1
A single-cell atlas of circulating immune cells over the first 2 months of age in extremely premature infants
Oluwabunmi Olaloye, Weihong Gu, Arne Gehlhaar, et al.
Science Translational Medicine (2025) Vol. 17, Iss. 788
Closed Access | Times Cited: 1
Overcoming barriers to single-cell RNA sequencing adoption in low- and middle-income countries
Tracy Boakye Serebour, Adam P. Cribbs, Mathew Baldwin, et al.
European Journal of Human Genetics (2024)
Open Access | Times Cited: 7
ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists
Raman Sethi, Kok Siong Ang, Mengwei Li, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage
Katy Börner, Philip D. Blood, Jonathan C. Silverstein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Deciphering cell types by integrating scATAC-seq data with genome sequences
Yuansong Zeng, Mai Luo, Ningyuan Shangguan, et al.
Nature Computational Science (2024) Vol. 4, Iss. 4, pp. 285-298
Open Access | Times Cited: 5
Unbiasedly decoding the tumor microenvironment with single-cell multiomics analysis in pancreatic cancer
Yifan Fu, Jinxin Tao, Tao Liu, et al.
Molecular Cancer (2024) Vol. 23, Iss. 1
Open Access | Times Cited: 5
Advances in single-cell transcriptomics in animal research
Yunan Yan, Senlin Zhu, Minghui Jia, et al.
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
A tunable human intestinal organoid system achieves controlled balance between self-renewal and differentiation
Yang Li, Xulei Wang, Xingyu Zhou, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Cortical arealization of interneurons defines shared and distinct molecular programs in developing human and macaque brains
Xiangling Feng, Yingjie Gao, Fan Chu, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
FastCCC: A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics studies
Siyu Hou, Wenjing Ma, Xiang Zhou
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Membranous Nephropathy Target Antigens Display Podocyte-Specific and Non-Specific Expression in Healthy Kidneys
Ying Dong, Hui Xu, Damu Tang
Genes (2025) Vol. 16, Iss. 3, pp. 241-241
Open Access
UniMap: Type‐Level Integration Enhances Biological Preservation and Interpretability in Single‐Cell Annotation
Haitao Hu, Yue Guo, Fujing Ge, et al.
Advanced Science (2025)
Open Access
CytoPheno: Automated descriptive cell type naming in flow and mass cytometry
Amanda R. Tursi, Celine S. Lages, Kenneth Quayle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
A highly resolved integrated transcriptomic atlas of human breast cancers
Andrew Chen, Lina Kroehling, Christina S. Ennis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
TimeFlow: A Density‐Driven Pseudotime Method for Flow Cytometry Data Analysis
Margarita Liarou, Thomas Matthes, Stéphane Marchand‐Maillet
Cytometry Part A (2025)
Open Access
T cells promote distinct transcriptional programs of cutaneous inflammatory disease in keratinocytes and dermal fibroblasts
Hannah A. DeBerg, Mitch L. Fahning, Suraj R. Varkhande, et al.
Journal of Investigative Dermatology (2025)
Closed Access
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