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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
Histochemistry and Cell Biology (2023) Vol. 160, Iss. 3, pp. 223-251
Open Access | Times Cited: 61

Showing 1-25 of 61 citing articles:

SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
Nature Methods (2024)
Open Access | Times Cited: 51
The past, present, and future of the brain imaging data structure (BIDS)
Russell A. Poldrack, Christopher J. Markiewicz, Stefan Appelhoff, et al.
Imaging Neuroscience (2024) Vol. 2, pp. 1-19
Open Access | Times Cited: 14
Cell Painting Gallery: an open resource for image-based profiling
Erin Weisbart, Ankur Kumar, John Arévalo, et al.
Nature Methods (2024) Vol. 21, Iss. 10, pp. 1775-1777
Closed Access | Times Cited: 12
Vitessce: integrative visualization of multimodal and spatially resolved single-cell data
Mark S. Keller, Ilan Gold, Chuck McCallum, et al.
Nature Methods (2024)
Open Access | Times Cited: 12
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
Tong Li, Dave Horsfall, Daniela Basurto-Lozada, et al.
Nature Methods (2024)
Closed Access | Times Cited: 11
Image processing tools for petabyte-scale light sheet microscopy data
Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 10
Evolution and impact of high content imaging
Gregory P. Way, Heba Sailem, Steven Shave, et al.
SLAS DISCOVERY (2023) Vol. 28, Iss. 7, pp. 292-305
Open Access | Times Cited: 21
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023
Matthew Thakur, Annalisa Buniello, Cath Brooksbank, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D10-D17
Open Access | Times Cited: 21
Opportunities and challenges for deep learning in cell dynamics research
Binghao Chai, Christoforos Efstathiou, Haoran Yue, et al.
Trends in Cell Biology (2023)
Open Access | Times Cited: 18
Building a FAIR image data ecosystem for microscopy communities
Isabel Kemmer, Antje Keppler, Beatriz Serrano‐Solano, et al.
Histochemistry and Cell Biology (2023)
Open Access | Times Cited: 17
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
Image processing tools for petabyte-scale light sheet microscopy data
Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, et al.
Nature Methods (2024) Vol. 21, Iss. 12, pp. 2342-2352
Open Access | Times Cited: 7
A data portal for providing standardized annotations for cryo-electron tomography
Utz H. Ermel, Anchi Cheng, Jing Ni, et al.
Nature Methods (2024)
Closed Access | Times Cited: 6
A practical guide to bioimaging research data management in core facilities
Christian Schmidt, Tom Boissonnet, Julia Dohle, et al.
Journal of Microscopy (2024) Vol. 294, Iss. 3, pp. 350-371
Open Access | Times Cited: 5
Ultrack: pushing the limits of cell tracking across biological scales
Jordão Bragantini, Ilan Theodoro, Xiang Zhao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Growth of the maternal intestine during reproduction
Tomotsune Ameku, Anna Laddach, Hannah Beckwith, et al.
Cell (2025)
Open Access
Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data
Mark S. Keller, Ilan Gold, Chuck McCallum, et al.
(2021)
Open Access | Times Cited: 35
Thirty Years of the DICOM Standard
Michele Larobina
Tomography (2023) Vol. 9, Iss. 5, pp. 1829-1838
Open Access | Times Cited: 14
AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth
Ivan R. Nabi, Ben Cardoen, Ismail M. Khater, et al.
The Journal of Cell Biology (2024) Vol. 223, Iss. 8
Open Access | Times Cited: 5
Cell heterogeneity and fate bistability drive tissue patterning during intestinal regeneration
Cornelia Schwayer, Silvia Barbiero, David B. Brückner, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
A scoping study of the whole-cell imaging literature: a foundational corpus, potential for data-mining and research synthesis, and a call for standardization of an emerging field
Mary Mirvis, Brooke Weingard, Steven N. Goodman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Making Sense of Metadata Mess: Alignment and Risk Assessment for Diatom Data Use Case
Kio Polson, Marina Potapova, Uttam Meena, et al.
Communications in computer and information science (2025), pp. 129-140
Closed Access
Enabling global image data sharing in the life sciences
Peter Bajcsy, Sreenivas Bhattiprolu, Katy Börner, et al.
Nature Methods (2025)
Open Access
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
Adam K. Glaser, Jayaram Chandrashekar, Joshua Vasquez, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Robust virtual staining of landmark organelles
Ziwen Liu, Eduardo Hirata-Miyasaki, Soorya Pradeep, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
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