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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes
Milo S. Johnson, Sandeep Venkataram, Sergey Kryazhimskiy
Journal of Molecular Evolution (2023) Vol. 91, Iss. 3, pp. 263-280
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Extreme Sensitivity of Fitness to Environmental Conditions: Lessons from #1BigBatch
Grant Kinsler, Kara Schmidlin, Daphne Newell, et al.
Journal of Molecular Evolution (2023) Vol. 91, Iss. 3, pp. 293-310
Open Access | Times Cited: 26
Assessing microbiome population dynamics using wild-type isogenic standardized hybrid (WISH)-tags
Benjamin B. J. Daniel, Yves Steiger, Anna Sintsova, et al.
Nature Microbiology (2024) Vol. 9, Iss. 4, pp. 1103-1116
Open Access | Times Cited: 14
Environment-independent distribution of mutational effects emerges from microscopic epistasis
Sarah M. Ardell, Alena Martsul, Milo S. Johnson, et al.
Science (2024) Vol. 386, Iss. 6717, pp. 87-92
Open Access | Times Cited: 9
Principles of digital sequencing using unique molecular identifiers
Daniel Andersson, Firaol Tamiru Kebede, Mandy Escobar, et al.
Molecular Aspects of Medicine (2024) Vol. 96, pp. 101253-101253
Open Access | Times Cited: 8
Analysis of synthetic cellular barcodes in the genome and transcriptome with BARtab and bartools
Henrietta Holze, Laure Talarmain, Katie Fennell, et al.
Cell Reports Methods (2024) Vol. 4, Iss. 5, pp. 100763-100763
Open Access | Times Cited: 6
Flexible parsing, interpretation, and editing of technical sequences with splitcode
Delaney K. Sullivan, Lior Pachter
Bioinformatics (2024) Vol. 40, Iss. 6
Open Access | Times Cited: 6
Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution
Pieter Spealman, Titir De, Julie N. Chuong, et al.
Journal of Molecular Evolution (2023) Vol. 91, Iss. 3, pp. 356-368
Open Access | Times Cited: 15
ORBIT for E. coli: kilobase-scale oligonucleotide recombineering at high throughput and high efficiency
Scott Saunders, Ayesha Ahmed
Nucleic Acids Research (2024) Vol. 52, Iss. 8, pp. e43-e43
Open Access | Times Cited: 5
Analysis of metagenomic data
Shaopeng Liu, Judith Rodríguez, Viorel Munteanu, et al.
Nature Reviews Methods Primers (2025) Vol. 5, Iss. 1
Closed Access
Digital sequencing is improved by using structured unique molecular identifiers
Peter Micallef, Manuel Luna Santamaría, Mandy Escobar, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Hierarchical Lineage Tracing Reveals Diverse Pathways of AML Treatment Resistance
Rachel Saxe, Hugh Stuart, Abigail C. Marshall, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Extracting, filtering and simulating cellular barcodes using CellBarcode tools
Wenjie Sun, Meghan Perkins, Mathilde Huyghe, et al.
Nature Computational Science (2024) Vol. 4, Iss. 2, pp. 128-143
Open Access | Times Cited: 3
Optimizing Nucleic Acid Delivery Systems through Barcode Technology
Soan Park, Mibang Kim, Jeong Wook Lee
ACS Synthetic Biology (2024) Vol. 13, Iss. 4, pp. 1006-1018
Closed Access | Times Cited: 3
Improving the accuracy of bulk fitness assays by correcting barcode processing biases
Ryan Seamus McGee, Grant Kinsler, Dmitri A. Petrov, et al.
Molecular Biology and Evolution (2024) Vol. 41, Iss. 8
Open Access | Times Cited: 3
Quantifying orthogonal barcodes for sequence census assays
A. Sina Booeshaghi, Kyung Hoi Min, Jase Gehring, et al.
Bioinformatics Advances (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 7
Environment-independent distribution of mutational effects emerges from microscopic epistasis
Sarah M. Ardell, Alena Martsul, Milo S. Johnson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Barcoding Populations of Pseudomonas fluorescens SBW25
Loukas Theodosiou, Andrew D. Farr, Paul B. Rainey
Journal of Molecular Evolution (2023) Vol. 91, Iss. 3, pp. 254-262
Open Access | Times Cited: 6
From sequence to function and back – High-throughput sequence-function mapping in synthetic biology
Simon Höllerer, Charlotte Desczyk, Ricardo Farrera Muro, et al.
Current Opinion in Systems Biology (2023) Vol. 37, pp. 100499-100499
Open Access | Times Cited: 5
Quantifying microbial fitness in high-throughput experiments
Justus Wilhelm Fink, Michael Manhart
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
NucBalancer: streamlining barcode sequence selection for optimal sample pooling for sequencing
Saurabh Gupta, Ankur Sharma
Gigabyte (2024) Vol. 2024
Open Access | Times Cited: 1
Quantifying microbial fitness in high-throughput experiments
Justus Wilhelm Fink, Michael Manhart
(2024)
Open Access | Times Cited: 1
Flexible parsing, interpretation, and editing of technical sequences with splitcode
Delaney K. Sullivan, Lior Pachter
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Species identification and germplasm conservation of origanum based on chloroplast genes
Mehmet Alp Furan
Genetic Resources and Crop Evolution (2023) Vol. 71, Iss. 3, pp. 1101-1112
Closed Access | Times Cited: 3
ORBIT forE. coli: Kilobase-scale oligonucleotide recombineering at high throughput and high efficiency
Scott Saunders, Ayesha Ahmed
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Quantifying microbial fitness in high-throughput experiments
Justus Wilhelm Fink, Michael Manhart
(2024)
Open Access
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