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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Molecular dynamics analysis of a flexible loop at the binding interface of the SARS‐CoV‐2 spike protein receptor‐binding domain
Jonathan K. Williams, Baifan Wang, Andrew Sam, et al.
Proteins Structure Function and Bioinformatics (2021) Vol. 90, Iss. 5, pp. 1044-1053
Open Access | Times Cited: 41

Showing 1-25 of 41 citing articles:

Omicron (BA.1) and sub‐variants (BA.1.1, BA.2, and BA.3) of SARS‐CoV‐2 spike infectivity and pathogenicity: A comparative sequence and structural‐based computational assessment
Suresh Kumar, Kalimuthu Karuppanan, Gunasekaran Subramaniam
Journal of Medical Virology (2022) Vol. 94, Iss. 10, pp. 4780-4791
Open Access | Times Cited: 189
Predicting Functional Conformational Ensembles and Binding Mechanisms of Convergent Evolution for SARS-CoV-2 Spike Omicron Variants Using AlphaFold2 Sequence Scanning Adaptations and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Identification of medicinal plant-based phytochemicals as a potential inhibitor for SARS-CoV-2 main protease (Mpro) using molecular docking and deep learning methods
Alomgir Hossain, Md. Ekhtiar Rahman, Md Siddiqur Rahman, et al.
Computers in Biology and Medicine (2023) Vol. 157, pp. 106785-106785
Open Access | Times Cited: 18
How the strength of proteins interactions affects the phase behavior of protein complexes
Q. Jiao, Haoxin Ye, Nan Lv, et al.
Food Hydrocolloids (2023) Vol. 149, pp. 109654-109654
Closed Access | Times Cited: 14
Role of N343 glycosylation on the SARS-CoV-2 S RBD structure and co-receptor binding across variants of concern
Callum M. Ives, Linh Nguyen, Carl A. Fogarty, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Exploring Conformational Landscapes and Binding Mechanisms of Convergent Evolution for the SARS-CoV-2 Spike Omicron Variant Complexes with the ACE2 Receptor Using AlphaFold2-Based Structural Ensembles and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 25, pp. 17720-17744
Closed Access | Times Cited: 4
Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling
Gennady M. Verkhivker, Steve Agajanian, Deniz Yaşar Öztaş, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 10, pp. 5172-5191
Open Access | Times Cited: 29
Molecular dynamics studies reveal structural and functional features of the SARS‐CoV‐2 spike protein
Ludovico Pipitò, Roxana‐Maria Rujan, Christopher A. Reynolds, et al.
BioEssays (2022) Vol. 44, Iss. 9
Open Access | Times Cited: 19
How helpful were molecular dynamics simulations in shaping our understanding of SARS-CoV-2 spike protein dynamics?
Jameel M. Abduljalil, Ahmed M. Elghareib, Ahmed Samir, et al.
International Journal of Biological Macromolecules (2023) Vol. 242, pp. 125153-125153
Open Access | Times Cited: 11
AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1657-1681
Closed Access | Times Cited: 3
Molecular Dynamics Simulation Study of the Interaction between Human Angiotensin Converting Enzyme 2 and Spike Protein Receptor Binding Domain of the SARS-CoV-2 B.1.617 Variant
Priya Antony, Ranjit Vijayan
Biomolecules (2021) Vol. 11, Iss. 8, pp. 1244-1244
Open Access | Times Cited: 24
SARS-CoV-2 variants impact RBD conformational dynamics and ACE2 accessibility
Mariana Valério, Luís Borges-Araújo, Manuel N. Melo, et al.
Frontiers in Medical Technology (2022) Vol. 4
Open Access | Times Cited: 15
The accomplices: Heparan sulfates and N-glycans foster SARS-CoV-2 spike:ACE2 receptor binding and virus priming
Giulia Paiardi, Matheus Ferraz, Marco Rusnati, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 43
Open Access | Times Cited: 2
Triterpene Derivatives as Potential Inhibitors of the RBD Spike Protein from SARS-CoV-2: An In Silico Approach
Mayra Avelar, Laura Pedraza‐González, Adalgisa Sinicropi, et al.
Molecules (2023) Vol. 28, Iss. 5, pp. 2333-2333
Open Access | Times Cited: 7
Structural Characterization of a Neutralizing Nanobody With Broad Activity Against SARS-CoV-2 Variants
Tingting Li, Bingjie Zhou, Zhipu Luo, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 10
Lead compound discovery using pharmacophore-based models of small-molecule metabolites from human blood as inhibitor cellular entry of SARS-CoV-2
Ellin Febrina, Aiyi Asnawi
Journal of Pharmacy & Pharmacognosy Research (2023) Vol. 11, Iss. 5, pp. 810-822
Open Access | Times Cited: 5
The accomplices: Heparan sulfates and N-glycans foster SARS-CoV-2 spike:ACE2 receptor binding and virus priming
Giulia Paiardi, Matheus Ferraz, Marco Rusnati, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
MultiTEP-Based Vaccines Targeting SARS-CoV-2 Spike Protein IgG Epitopes Elicit Robust Binding Antibody Titers with Limited Virus-Neutralizing Activity
Tatevik Antonyan, Garri Chilingaryan, Karen Zagorski, et al.
Pathogens (2024) Vol. 13, Iss. 6, pp. 520-520
Open Access | Times Cited: 1
Discovery of Natural Lead Compound from Dendrobium sp. against SARS-CoV-2 Infection
Jutamas Jiaranaikulwanitch, Wipawadee Yooin, Nopporn Chutiwitoonchai, et al.
Pharmaceuticals (2022) Vol. 15, Iss. 5, pp. 620-620
Open Access | Times Cited: 6
Nanobody derived using a peptide epitope from the spike protein receptor-binding motif inhibits entry of SARS-CoV-2 variants
Nivya Mendon, Rayees A. Ganie, Shubham Kesarwani, et al.
Journal of Biological Chemistry (2022) Vol. 299, Iss. 1, pp. 102732-102732
Open Access | Times Cited: 6
Novel Inhibitory Role of Fenofibric Acid by Targeting Cryptic Site on the RBD of SARS-CoV-2
Jianxiang Huang, Chun Chan, Ruhong Zhou
Biomolecules (2023) Vol. 13, Iss. 2, pp. 359-359
Open Access | Times Cited: 3
Mutation of a distal gating residue modulates NADH binding in NADH:Quinone oxidoreductase from Pseudomonas aeruginosa PAO1
Bilkis Mehrin Moni, Joanna Afokai Quaye, Giovanni Gadda
Journal of Biological Chemistry (2023) Vol. 299, Iss. 4, pp. 103044-103044
Open Access | Times Cited: 2
All‐atom simulations of the trimeric spike protein of SARS‐CoV‐2 in aqueous medium: Nature of interactions, conformational stability and free energy diagrams for conformational transition of the protein
Bhavana Panthi, Saheb Dutta, Amalendu Chandra
Journal of Computational Chemistry (2023) Vol. 44, Iss. 17, pp. 1560-1577
Closed Access | Times Cited: 2
#GotGlycans: Role of N343 Glycosylation on the SARS-CoV-2 S RBD Structure and Co-Receptor Binding Across Variants of Concern
Callum M. Ives, Linh Nguyen, Carl A. Fogarty, et al.
(2024)
Open Access
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