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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 26-50 of 75 citing articles:

Spatiotemporally resolved transcriptomics reveals the cellular dynamics of human retinal development
Jinglong Zhang, Jiao Wang, Qiongjie Zhou, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Quantifying and interpreting biologically meaningful spatial signatures within tumor microenvironments
Siyu Jing, He-qi Wang, Ping Lin, et al.
npj Precision Oncology (2025) Vol. 9, Iss. 1
Open Access
Multi-task benchmarking of spatially resolved gene expression simulation models
Xiaoqi Liang, Marni Torkel, Yue Cao, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Streamlining spatial omics data analysis with Pysodb
Senlin Lin, Fangyuan Zhao, Zihan Wu, et al.
Nature Protocols (2023) Vol. 19, Iss. 3, pp. 831-895
Closed Access | Times Cited: 12
SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics
Asish Kumar Swain, Vrushali Pandit, Jyoti Sharma, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 4
stDyer enables spatial domain clustering with dynamic graph embedding
Ke Xu, Yu Xu, Zirui Wang, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes
Ran Wang, Qian Yan, Xiaojing Guo, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
SRT-Server: powering the analysis of spatial transcriptomic data
Sheng Yang, Xiang Zhou
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 3
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multi-modal feature representation
Daoliang Zhang, Na Yu, Wenrui Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning
Yunfei Hu, Yikang Li, Manfei Xie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Yikang Li, Manfei Xie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Complete spatially resolved gene expression is not necessary for identifying spatial domains
Senlin Lin, Yan Cui, Fangyuan Zhao, et al.
Cell Genomics (2024) Vol. 4, Iss. 6, pp. 100565-100565
Open Access | Times Cited: 2
Unraveling Spatial Domain Characterization in Spatially Resolved Transcriptomics with Robust Graph Contrastive Clustering
Yingxi Zhang, Zhuohan Yu, Ka‐Chun Wong, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 2
Precise detection of cell-type-specific domains in spatial transcriptomics
Zhihan Ruan, Weijun Zhou, Zhihong Liu, et al.
Cell Reports Methods (2024) Vol. 4, Iss. 8, pp. 100841-100841
Open Access | Times Cited: 2
Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP
Chengwei Zhong, Kok Siong Ang, Jinmiao Chen
Nature Methods (2024) Vol. 21, Iss. 11, pp. 2072-2083
Open Access | Times Cited: 2
STEP: Spatial Transcriptomics Embedding Procedure for Multi-scale Biological Heterogeneities Revelation in Multiple Samples
L. Li, Zhong Li, Xiao-ming Yin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Evaluating the Utilities of Large Language Models in Single-cell Data Analysis
Hongyu Zhao, Tianyu Liu, Kexing Li, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 4
STCC: consensus clustering enhances spatial domain detection for spatial transcriptomics data
Congcong Hu, Nana Wei, Jiyuan Yang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
stDyer enables spatial domain clustering with dynamic graph embedding
Ke Xu, Yu Xu, Zirui Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
GraphPCA: a fast and interpretable dimension reduction algorithm for spatial transcriptomics data
Jiyuan Yang, Lu Wang, Lin Liu, et al.
Research Square (Research Square) (2024)
Closed Access | Times Cited: 1
Accurate Identification of Spatial Domain by Incorporating Global Spatial Proximity and Local Expression Proximity
Yuanyuan Yu, Yao He, Zhi Xie
Biomolecules (2024) Vol. 14, Iss. 6, pp. 674-674
Open Access | Times Cited: 1
Next‐generation spatial transcriptomics: unleashing the power to gear up translational oncology
Nan Wang, Weifeng Hong, Yixing Wu, et al.
MedComm (2024) Vol. 5, Iss. 10
Open Access | Times Cited: 1
BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data
Yanghong Guo, Bencong Zhu, Chen Tang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 1
SpottedPy quantifies relationships between spatial transcriptomic hotspots and uncovers environmental cues of epithelial-mesenchymal plasticity in breast cancer
Eloise Withnell, Maria Secrier
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
Statistical and computational methods for enabling the clinical and translational application of spatial transcriptomics
Peijun Wu, Xiang Zhou
Clinical and Translational Medicine (2024) Vol. 14, Iss. 12
Closed Access | Times Cited: 1

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