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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Eleven grand challenges in single-cell data science
David Lähnemann, Johannes Köster, Ewa Szczurek, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 990

Showing 26-50 of 990 citing articles:

Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
Shaked Slovin, Annamaria Carissimo, Francesco Panariello, et al.
Methods in molecular biology (2021), pp. 343-365
Closed Access | Times Cited: 144
Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data
Nan Miles Xi, Jingyi Jessica Li
Cell Systems (2020) Vol. 12, Iss. 2, pp. 176-194.e6
Open Access | Times Cited: 140
LifeTime and improving European healthcare through cell-based interceptive medicine
Nikolaus Rajewsky, Geneviève Almouzni, Stanislaw A. Gorski, et al.
Nature (2020) Vol. 587, Iss. 7834, pp. 377-386
Open Access | Times Cited: 138
DestVI identifies continuums of cell types in spatial transcriptomics data
Romain Lopez, Baoguo Li, Hadas Keren‐Shaul, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 9, pp. 1360-1369
Open Access | Times Cited: 132
Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease
Monika Piwecka, Nikolaus Rajewsky, Agnieszka Rybak-Wolf
Nature Reviews Neurology (2023) Vol. 19, Iss. 6, pp. 346-362
Open Access | Times Cited: 131
Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues
Duy Pham, Xiao Tan, Brad Balderson, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 128
The Specious Art of Single-Cell Genomics
Tara Chari, Lior Pachter
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 119
Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID
Akira Cortal, Loredana Martignetti, Emmanuelle Six, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 9, pp. 1095-1102
Open Access | Times Cited: 112
Mapping the genomic diaspora of gastric cancer
Khay Guan Yeoh, Patrick Tan
Nature reviews. Cancer (2021) Vol. 22, Iss. 2, pp. 71-84
Closed Access | Times Cited: 112
Detection of differentially abundant cell subpopulations in scRNA-seq data
Jun Zhao, Ariel Jaffe, Henry Li, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 22
Open Access | Times Cited: 111
Multimodal data fusion for cancer biomarker discovery with deep learning
Sandra Steyaert, Marija Pizurica, Divya Nagaraj, et al.
Nature Machine Intelligence (2023) Vol. 5, Iss. 4, pp. 351-362
Open Access | Times Cited: 110
Applications of single-cell and bulk RNA sequencing in onco-immunology
M. Kuksin, Daphné Morel, Marine Aglave, et al.
European Journal of Cancer (2021) Vol. 149, pp. 193-210
Open Access | Times Cited: 102
scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network
Xin Shao, Haihong Yang, Xiang Zhuang, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 21, pp. e122-e122
Open Access | Times Cited: 101
BABEL enables cross-modality translation between multiomic profiles at single-cell resolution
Kevin Wu, Kathryn E. Yost, Howard Y. Chang, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 15
Open Access | Times Cited: 99
Deciphering cell lineage specification of human lung adenocarcinoma with single-cell RNA sequencing
Zhoufeng Wang, Zhe Li, Kun Zhou, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 99
Extrachromosomal circular DNA in cancer: history, current knowledge, and methods
Julie B. Noer, Oskar Kjærgaard Hørsdal, Xi Xiang, et al.
Trends in Genetics (2022) Vol. 38, Iss. 7, pp. 766-781
Open Access | Times Cited: 99
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 97
Accurate and fast cell marker gene identification with COSG
Min Dai, Xiaobing Pei, Xiu‐Jie Wang
Briefings in Bioinformatics (2022) Vol. 23, Iss. 2
Open Access | Times Cited: 83
Recent developments in application of single-cell RNA sequencing in the tumour immune microenvironment and cancer therapy
Peiheng Li, Xiangyu Kong, Yazhou He, et al.
Military Medical Research (2022) Vol. 9, Iss. 1
Open Access | Times Cited: 82
Atlas of the aging mouse brain reveals white matter as vulnerable foci
Oliver Hãhn, Aulden Foltz, Micaiah Atkins, et al.
Cell (2023) Vol. 186, Iss. 19, pp. 4117-4133.e22
Open Access | Times Cited: 76
What are housekeeping genes?
Chintan Joshi, Wenfan Ke, Anna Drangowska-Way, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 7, pp. e1010295-e1010295
Open Access | Times Cited: 70
Human microglia show unique transcriptional changes in Alzheimer’s disease
Katherine E. Prater, Kevin J. Green, Sainath Mamde, et al.
Nature Aging (2023) Vol. 3, Iss. 7, pp. 894-907
Open Access | Times Cited: 67
CZ CELL×GENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data
Shibla Abdulla, Brian D. Aevermann, Pedro Assis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 57
Biologically informed deep learning to query gene programs in single-cell atlases
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
Nature Cell Biology (2023)
Open Access | Times Cited: 51
Deep learning applications in single-cell genomics and transcriptomics data analysis
Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz, et al.
Biomedicine & Pharmacotherapy (2023) Vol. 165, pp. 115077-115077
Open Access | Times Cited: 47

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