Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Simulating 500 million years of evolution with a language model
Thomas Hayes, Roshan Rao, Halil Akin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 69

Showing 26-50 of 69 citing articles:

FoldToken3: Fold Structures Worth 256 Words or Less
Zhangyang Gao, Cheng Tan, Stan Z. Li
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 1
moPPIt:De NovoGeneration of Motif-Specific Binders with Protein Language Models
Tong Chen, Yinuo Zhang, Pranam Chatterjee
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Miniaturizing, Modifying, and Augmenting Nature’s Proteins with Raygun
Kapil Devkota, Daichi Shonai, J. G. Mao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
AI-driven antibody design with generative diffusion models: current insights and future directions
Xinheng He, Jun-Rui Li, James Xu, et al.
Acta Pharmacologica Sinica (2024)
Closed Access | Times Cited: 1
SeqDance: A Protein Language Model for Representing Protein Dynamic Properties
Chao Hou, Yufeng Shen
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Progress and opportunities of foundation models in bioinformatics
Qing Li, Zhihang Hu, Yixuan Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 1
Distilling structural representations into protein sequence models
Jeffrey Ouyang-Zhang, Chengyue Gong, Yue Zhao, et al.
(2024)
Open Access | Times Cited: 1
AI-driven construction of digital cell model
Tao Yang, Fei Ma, Haili Qian, et al.
The Innovation Life (2024), pp. 100102-100102
Closed Access | Times Cited: 1
AlphaFold3 versus experimental structures: assessment of the accuracy in ligand-bound G protein-coupled receptors
Xinheng He, Jia Li, Shi-yi Shen, et al.
Acta Pharmacologica Sinica (2024)
Closed Access | Times Cited: 1
Ex-Meta scientists debut gigantic AI protein design model
Ewen Callaway
Nature (2024)
Closed Access
Protein Set Transformer: A protein-based genome language model to power high diversity viromics
Cody Martin, Anthony Gitter, Karthik Anantharaman
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Annotation Vocabulary (Might Be) All You Need
Logan Hallee, Niko Rafailidis, Colin Horger, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Synergizing sequence and structure representations to predict protein variants
Tong Chen, Pranam Chatterjee
Cell Research (2024) Vol. 34, Iss. 9, pp. 597-598
Open Access
Toward De Novo Protein Design from Natural Language
Fengyuan Dai, Yuliang Fan, Jin Su, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
FoldToken4: Consistent & Hierarchical Fold Language
Zhangyang Gao, Cheng Tan, Stan Z. Li
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Tokenized and Continuous Embedding Compressions of Protein Sequence and Structure
Amy X. Lu, Wilson Yan, Kevin Yang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Predict metal-binding proteins and structures through integration of evolutionary-scale and physics-based modeling
Xin Dai, Max Henderson, Shinjae Yoo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Benchmarking text-integrated protein language model embeddings and embedding fusion on diverse downstream tasks
Young Su Ko, Jonathan Parkinson, Wei Wang
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Integrating microscopy and transcriptomics from individual uncultured eukaryotic plankton
Catherine Gatt, Yike Xie, Kanu Wahi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
An outlook on structural biology after AlphaFold: tools, limits and perspectives
Serena Rosignoli, M Pacelli, Francesca Manganiello, et al.
FEBS Open Bio (2024)
Open Access
RNA-DCGen: Dual Constrained RNA Sequence Generation with LLM-Attack
Haz Sameen Shahgir, Md. Rownok Zahan Ratul, Md Toki Tahmid, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Deep learning in template-free de novo biosynthetic pathway design of natural products
Xueying Xie, Lin Gui, Baixue Qiao, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access
The end of protein structure prediction: Improving prediction accuracy in chimeric proteins by windowed multiple sequence alignment
Sanketh Vedula, Alex Bronstein, Ailie Marx
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Benchmarking Generative Models for Antibody Design
Talip Uçar, Cedric Malherbe, Ferran Gonzalez Hernandez
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Decipher Fundamental Atomic Interactions to Unify Generative Molecular Docking and Design
Xingang Peng, Ruixia Guo, Yanchao Xu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access

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