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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Current structure predictors are not learning the physics of protein folding
Carlos Outeiral, Daniel A. Nissley, Charlotte M. Deane
Bioinformatics (2022) Vol. 38, Iss. 7, pp. 1881-1887
Open Access | Times Cited: 70

Showing 26-50 of 70 citing articles:

Advancements in protein structure prediction: A comparative overview of AlphaFold and its derivatives
Yuktika Malhotra, Jerry R. John, Deepika Yadav, et al.
Computers in Biology and Medicine (2025) Vol. 188, pp. 109842-109842
Closed Access
Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms
Alexander Greenshields‐Watson, Brennan Abanades, Charlotte M. Deane
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 3
Challenges in describing the conformation and dynamics of proteins with ambiguous behavior
Joel Roca‐Martínez, Tamás Lázár, Jose Gavaldá-García, et al.
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 15
Insights into the Adsorption Mechanisms of the Antimicrobial Peptide CIDEM-501 on Membrane Models
Daniel Alpízar-Pedraza, Yessica Roque-Diaz, Hilda Garay, et al.
Antibiotics (2024) Vol. 13, Iss. 2, pp. 167-167
Open Access | Times Cited: 2
Improving AlphaFold Predicted Contacts for Alpha-Helical Transmembrane Proteins Using Structural Features
Aman Sawhney, Jiefu Li, Li Liao
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 10, pp. 5247-5247
Open Access | Times Cited: 2
Non-standard proteins in the lenses of AlphaFold3 - case study of amyloids
Alicja W. Wojciechowska, Jakub W. Wojciechowski, Małgorzata Kotulska
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Codon language embeddings provide strong signals for protein engineering
Carlos Outeiral, Charlotte M. Deane
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 11
Assessing protein homology models with docking reproducibility
Alexander P. Plonski, Scott M. Reed
Journal of Molecular Graphics and Modelling (2023) Vol. 121, pp. 108430-108430
Open Access | Times Cited: 6
Best Practices of Using AI-Based Models in Crystallography and Their Impact in Structural Biology
Marc Graille, Sophie Sacquin‐Mora, Antoine Taly
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 12, pp. 3637-3646
Open Access | Times Cited: 6
Protein structure and dynamics in the era of integrative structural biology
Rita Grandori
Frontiers in Biophysics (2023) Vol. 1
Open Access | Times Cited: 5
Design of stable circular permutants of the GroEL chaperone apical domain
Tatiana N. Melnik, Maria A. Majorina, Daria E. Vorobeva, et al.
Cell Communication and Signaling (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 1
Protein thermal sensing regulates physiological amyloid aggregation
Dane Marijan, Evgenia A. Momchilova, Daniel Burns, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Applications of Bioinformatics on Genomics and Proteomics Levels Highlighted in Brucella Pathogen
Alyaa Elrashedy, Mohamed Nayel, Akram Salama, et al.
Journal of Current Veterinary Research (2024) Vol. 6, Iss. 1, pp. 1-15
Open Access | Times Cited: 1
Identification of a putative novel polycyclic aromatic hydrocarbon-biodegrading gene cluster in a marine Roseobacteraceae bacterium Sagittula sp. MA-2
Mayuko Abe, Miharu Sakai, Robert A. Kanaly, et al.
Microbiology Spectrum (2024)
Open Access | Times Cited: 1
Aromatic-Aromatic Interactions Drive Fold Switch of GA95 and GB95 with Three Residue Difference
Chen Chen, Zeting Zhang, Mojie Duan, et al.
Chemical Science (2024)
Closed Access | Times Cited: 1
The Wako–Saitô–Muñoz–Eaton Model for Predicting Protein Folding and Dynamics
Koji Ooka, Runjing Liu, Munehito Arai
Molecules (2022) Vol. 27, Iss. 14, pp. 4460-4460
Open Access | Times Cited: 6
Recent Advances in Protein Folding Pathway Prediction through Computational Methods
Kailong Zhao, Liang Fang, Yuhao Xia, et al.
Current Medicinal Chemistry (2023) Vol. 31, Iss. 26, pp. 4111-4126
Closed Access | Times Cited: 3
What are the minimal folding seeds in proteins? Experimental and theoretical assessment of secondary structure propensities of small peptide fragments
Zuzana Osifová, Tadeáš Kalvoda, Jakub Galgonek, et al.
Chemical Science (2023) Vol. 15, Iss. 2, pp. 594-608
Open Access | Times Cited: 3
Evolutionary selection of proteins with two folds
Joseph W. Schafer, Lauren L. Porter
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Pathfinder: protein folding pathway prediction based on conformational sampling
Zhaohong Huang, Xinyue Cui, Yuhao Xia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
What the protein!? Computational methods for predicting microbial protein functions
Susanna R. Grigson, Robert P. Edwards
(2023)
Open Access | Times Cited: 2
Pathfinder: Protein folding pathway prediction based on conformational sampling
Zhaohong Huang, Xinyue Cui, Yuhao Xia, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 9, pp. e1011438-e1011438
Open Access | Times Cited: 2
SARS-CoV-2 proteins structural studies using synchrotron radiation
Maksim N. Kosenko, G. S. Onkhonova, Ivan M. Susloparov, et al.
Biophysical Reviews (2023) Vol. 15, Iss. 5, pp. 1185-1194
Open Access | Times Cited: 2
Developing similarity matrices for antibody-protein binding interactions
Sumaiya Islam, Robert J. Pantazes
PLoS ONE (2023) Vol. 18, Iss. 10, pp. e0293606-e0293606
Open Access | Times Cited: 2
AlphaFold2 fails to predict protein fold switching
Devlina Chakravarty, Lauren L. Porter
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4

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