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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

An end-to-end workflow for multiplexed image processing and analysis
Jonas Windhager, Vito Riccardo Tomaso Zanotelli, Daniel Schulz, et al.
Nature Protocols (2023) Vol. 18, Iss. 11, pp. 3565-3613
Open Access | Times Cited: 113

Showing 26-50 of 113 citing articles:

A Primer on Proteomic Characterization of Intercellular Communication in a Virus Microenvironment
James Kostas, Colter S Brainard, Ileana M. Cristea
Molecular & Cellular Proteomics (2025), pp. 100913-100913
Open Access
Spatial profiling identifies regionally distinct microenvironments and targetable immunosuppressive mechanisms in pediatric osteosarcoma pulmonary metastases.
Jason Eigenbrood, Nathan Wong, Paul Mallory, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Multiplex single‐cell profiling of putative cancer stem cell markers ALDH1, SOX9, SOX2, CD44, CD133 and CD15 in endometrial cancer
Hilde E. Lien, Marta E. Hjelmeland, Hege F. Berg, et al.
Molecular Oncology (2025)
Open Access
Epithelial miR-149-5p up-regulation is associated with immune evasion in progressive bronchial premalignant lesions
Boting Ning, David Chiu, RM Pfefferkorn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Tumor-associated stroma shapes the spatial tumor immune microenvironment of primary Ewing sarcomas
Christopher Kuo, Krinio Giannikou, N.-K. Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Celldetective: an AI-enhanced image analysis tool for unraveling dynamic cell interactions
Rémy Torro, Beatriz Díaz-Bello, Dalia El Arawi, et al.
(2025)
Open Access
Celldetective: an AI-enhanced image analysis tool for unraveling dynamic cell interactions
Rémy Torro, Beatriz Díaz-Bello, Dalia El Arawi, et al.
(2025)
Open Access
Long-Term Dystrophin Replacement Therapy in Duchenne Muscular Dystrophy Causes Cardiac Inflammation
Anne Forand, Sophie Moog, Nathalie Mougenot, et al.
JACC Basic to Translational Science (2025)
Open Access
Cellular and molecular features of asthma mucus plugs provide clues about their formation and persistence
Maude A. Liegeois, Aileen Hsieh, May Al-Fouadi, et al.
Journal of Clinical Investigation (2025) Vol. 135, Iss. 6
Open Access
Integrated workflow for analysis of immune enriched spatial proteomic data with IMmuneCite
Arianna Barbetta, Sarah Bangerth, Jason T. C. Lee, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Spatial mapping of immune cell environments in NF2-related schwannomatosis vestibular schwannoma
Adam P. Jones, Michael Haley, Miriam Hernandez-Meadows, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation
Pierre Bost, Daniel Schulz, Stefanie Engler, et al.
Nature Methods (2022) Vol. 20, Iss. 3, pp. 418-423
Open Access | Times Cited: 20
The promise and challenge of spatial omics in dissecting tumour microenvironment and the role of AI
Ren Yuan Lee, Chan Way Ng, Menaka Priyadharsani Rajapakse, et al.
Frontiers in Oncology (2023) Vol. 13
Open Access | Times Cited: 9
PENGUIN: A rapid and efficient image preprocessing tool for multiplexed spatial proteomics
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 3
SPACEc: A Streamlined, Interactive Python Workflow for Multiplexed Image Processing and Analysis
Yuqi Tan, Tim N. Kempchen, Martin Becker, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 3
Imaging mass cytometry-based characterisation of fibroblast subsets and their cellular niches in systemic sclerosis
Aleix Rius Rigau, Minrui Liang, Veda Devakumar, et al.
Annals of the Rheumatic Diseases (2024), pp. ard-226336
Open Access | Times Cited: 3
Intrinsic Differences in Spatiotemporal Organization and Stromal Cell Interactions Between Isogenic Lung Cancer Cells of Epithelial and Mesenchymal Phenotypes Revealed by High-Dimensional Single-Cell Analysis of Heterotypic 3D Spheroid Models
Maria L. Lotsberg, Gro Vatne Røsland, Austin Rayford, et al.
Frontiers in Oncology (2022) Vol. 12
Open Access | Times Cited: 12
GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data
Shoaib Ajaib, Disha Lodha, Steven Pollock, et al.
Neuro-Oncology (2023) Vol. 25, Iss. 7, pp. 1236-1248
Open Access | Times Cited: 7
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data
Lasse Meyer, Nils Eling, Bernd Bodenmiller
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Multi-V-Stain: Multiplexed Virtual Staining of Histopathology Whole-Slide Images
Sonali Andani, Boqi Chen, Joanna Ficek-Pascual, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
A perspective on FAIR quality control in multiplexed imaging data processing
Wouter-Michiel Vierdag, Sinem K. Saka
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 2
Multiplexed Imaging Mass Cytometry Analysis Characterizes the Vascular Niche in Pancreatic Cancer
Jonathan H. Sussman, Nathalia Kim, Samantha B. Kemp, et al.
Cancer Research (2024) Vol. 84, Iss. 14, pp. 2364-2376
Closed Access | Times Cited: 2
Spatial Deconvolution of Cell Types and Cell States at Scale Utilizing TACIT
Khoa Le Anh Huynh, Katarzyna M. Tyc, Bruno Fernandes Matuck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Deep cell phenotyping and spatial analysis of multiplexed imaging with TRACERx-PHLEX
Alastair Magness, Emma Colliver, Katey S.S. Enfield, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
Multiparameter quantitative analyses of diagnostic cells in brain tissues from tuberous sclerosis complex
Jerome S. Arceneaux, Asa A. Brockman, Rohit Khurana, et al.
Cytometry Part B Clinical Cytometry (2024)
Open Access | Times Cited: 2

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