Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Ilija Dukovski, Djordje Bajić, Jeremy M. Chacón, et al.
Nature Protocols (2021) Vol. 16, Iss. 11, pp. 5030-5082
Open Access | Times Cited: 122

Showing 26-50 of 122 citing articles:

Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Mahnoor Zulfiqar, Vinay Singh, Christoph Steinbeck, et al.
Critical Reviews in Microbiology (2024), pp. 1-40
Open Access | Times Cited: 4
A new era of synthetic biology—microbial community design
Anna Matuszyńska, Oliver Ebenhöh, Matías D. Zurbriggen, et al.
Synthetic Biology (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 4
Modeling Microbial Communities: Perspective and Challenges
Lavanya Raajaraam, Karthik Raman
ACS Synthetic Biology (2024) Vol. 13, Iss. 8, pp. 2260-2270
Open Access | Times Cited: 4
The Impact of Gut Microbiota-Derived Metabolites in Autism Spectrum Disorders
Lucía N. Peralta Marzal, Naika Prince, Djordje Bajić, et al.
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 18, pp. 10052-10052
Open Access | Times Cited: 37
Multi-Replicated Enrichment Communities as a Model System in Microbial Ecology
Sylvie Estrela, Álvaro Sánchez, María Rebolleda‐Gómez
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 35
Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure
Angela E. Zou, Kerry Nadeau, Xuejian Xiong, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 25
Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth
Arjun Chakrawal, Salvatore Calabrese, Anke M. Herrmann, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 24
From microbiome composition to functional engineering, one step at a time
Sebastian D. Burz, Senka Čaušević, Alma Dal Co, et al.
Microbiology and Molecular Biology Reviews (2023) Vol. 87, Iss. 4
Open Access | Times Cited: 12
Metabolic models of human gut microbiota: Advances and challenges
Daniel Garza, Didier Gonze, Haris Zafeiropoulos, et al.
Cell Systems (2023) Vol. 14, Iss. 2, pp. 109-121
Open Access | Times Cited: 11
2′-Fucosyllactose helps butyrate producers outgrow competitors in infant gut microbiota simulations
David M. Versluis, Ruud Schoemaker, Ellen Looijesteijn, et al.
iScience (2024) Vol. 27, Iss. 3, pp. 109085-109085
Open Access | Times Cited: 3
Machine learning for the advancement of genome-scale metabolic modeling
Pritam Kundu, Satyajit Beura, Suman Mondal, et al.
Biotechnology Advances (2024) Vol. 74, pp. 108400-108400
Closed Access | Times Cited: 3
Quantitative principles of microbial metabolism shared across scales
Daniel Sher, Daniel Segrè, Michael J. Follows
Nature Microbiology (2024) Vol. 9, Iss. 8, pp. 1940-1953
Closed Access | Times Cited: 3
Systems biology at the giga-scale: Large multiscale models of complex, heterogeneous multicellular systems
Arnau Montagud, Miguel Ponce-de-León, Alfonso Valencia
Current Opinion in Systems Biology (2021) Vol. 28, pp. 100385-100385
Open Access | Times Cited: 30
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling
Nana Y. D. Ankrah, David B. Bernstein, Matthew Biggs, et al.
mSystems (2021) Vol. 6, Iss. 6
Open Access | Times Cited: 28
Next-Generation Genome-Scale Metabolic Modeling through Integration of Regulatory Mechanisms
Carolina H. Chung, Da-Wei Lin, Alec Eames, et al.
Metabolites (2021) Vol. 11, Iss. 9, pp. 606-606
Open Access | Times Cited: 27
Modeling approaches for probing cross-feeding interactions in the human gut microbiome
Pedro A. Saa, Arlés Urrutia, Claudia Silva, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 20, pp. 79-89
Open Access | Times Cited: 27
Vitamin interdependencies predicted by metagenomics-informed network analyses and validated in microbial community microcosms
Tomas Hessler, Robert J. Huddy, Rohan Sachdeva, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 10
Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial interspecific competition
Jia Wang, Manasa R. Appidi, Leah H. Burdick, et al.
mSystems (2024) Vol. 9, Iss. 4
Open Access | Times Cited: 2
Use and limitations of genome-scale metabolic models in food microbiology
Vincent Somerville, Pranas Grigaitis, J.A. Battjes, et al.
Current Opinion in Food Science (2021) Vol. 43, pp. 225-231
Open Access | Times Cited: 20
Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution
Parsa Ghadermazi, Siu Hung Joshua Chan
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
A Multiscale Spatiotemporal Model Including a Switch from Aerobic to Anaerobic Metabolism Reproduces Succession in the Early Infant Gut Microbiota
David M. Versluis, Ruud Schoemaker, Ellen Looijesteijn, et al.
mSystems (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 12
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott, Sara Benito-Vaquerizo, Johannes Zimmerman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Controlling the human microbiome
Yang‐Yu Liu
Cell Systems (2023) Vol. 14, Iss. 2, pp. 135-159
Open Access | Times Cited: 6
Resolving metabolic interaction mechanisms in plant microbiomes
Alan R. Pacheco, Julia A. Vorholt
Current Opinion in Microbiology (2023) Vol. 74, pp. 102317-102317
Open Access | Times Cited: 6
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses
Christopher J. Skalnik, Sean Cheah, Mica Y. Yang, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 6, pp. e1011232-e1011232
Open Access | Times Cited: 6

Scroll to top