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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
Dongze He, Mohsen Zakeri, Hirak Sarkar, et al.
Nature Methods (2022) Vol. 19, Iss. 3, pp. 316-322
Open Access | Times Cited: 70

Showing 26-50 of 70 citing articles:

Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads
Dongze He, Yuan Gao, Spencer Skylar Chan, et al.
Bioinformatics (2024) Vol. 40, Iss. Supplement_1, pp. i297-i306
Open Access | Times Cited: 3
cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data
Yang Liao, Dinesh Raghu, Bhupinder Pal, et al.
Bioinformatics (2023) Vol. 39, Iss. 7
Open Access | Times Cited: 8
Accurate quantification of single-cell and single-nucleus RNA-seq transcripts using distinguishing flanking k-mers
Kristján Eldjárn Hjörleifsson, Delaney K. Sullivan, Nikhila Swarna, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Closed Access | Times Cited: 13
simpleaf: A simple, flexible, and scalable framework for single-cell transcriptomics data processing using alevin-fry
Dongze He, Rob Patro
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Uncovering functional lncRNAs by scRNA-seq with ELATUS
Enrique Goñi, Aina Maria Mas, Amaya Abad, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Hodge Decomposition of Single-Cell RNA Velocity
Zhe Su, Yiying Tong, Guo‐Wei Wei
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 8, pp. 3558-3568
Open Access | Times Cited: 2
The post-septic peripheral myeloid compartment reveals unexpected diversity in myeloid-derived suppressor cells
Evan L. Barrios, Jack R. Leary, Dijoia B. Darden, et al.
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 2
The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors
Allegra G. Hawkins, Joshua A. Shapiro, Stephanie J. Spielman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
IL-1β-induced epithelial cell and fibroblast transdifferentiation promotes neutrophil recruitment in chronic rhinosinusitis with nasal polyps
Xinyu Xie, Pin Wang, Min Jin, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
Uncovering functional lncRNAs by scRNA-seq with ELATUS
Enrique Goñi, Aina Maria Mas, Jovanna González, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
Accurate RNA velocity estimation based on multibatch network reveals complex lineage in batch scRNA-seq data
Zhaoyang Huang, Xinyang Guo, Jie Qin, et al.
BMC Biology (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 2
Fulgor: A fast and compactk-mer index for large-scale matching and color queries
Jason Fan, Noor Singh, Jamshed Khan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
nf-core/marsseq: systematic pre-processing pipeline for MARS-seq experiments
Martin Proks, José Alejandro Romero Herrera, Jakub Sedzinski, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads
Dongze He, Yuan Gao, Spencer Skylar Chan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Loss ofUBE3Aimpacts both neuronal and non-neuronal cells in human cerebral organoids
R. Chris Estridge, Z. Begum Yagci, Dilara Sen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Exogenous IL-2 delays memory precursors generation and is essential for enhancing memory cells effector functions
Shaoying Wang, Margaux Prieux, Simon de Bernard, et al.
iScience (2024) Vol. 27, Iss. 4, pp. 109411-109411
Open Access | Times Cited: 1
BEERS2: RNA-Seq simulation through high fidelity in silico modeling
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 1
Memory-Phenotype Ly49+ CD8 T emerging from the thymus develop into two subsets with distinct immune functions
Daphné Laubreton, Morgan Grau, Victor Malassigné, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Human PSCs determine the competency of cerebral organoid differentiation via FGF signaling and epigenetic mechanisms
Hirosato Ideno, Kent Imaizumi, Hiroko Shimada, et al.
iScience (2022) Vol. 25, Iss. 10, pp. 105140-105140
Open Access | Times Cited: 6
Universal preprocessing of single-cell genomics data
A. Sina Booeshaghi, Delaney K. Sullivan, Lior Pachter
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Single‐Nucleus RNA‐Sequencing in Brain Tissue
Rebecca Waag, Johannes Bohacek
Current Protocols (2023) Vol. 3, Iss. 11
Open Access | Times Cited: 3
Depletion of HIV reservoir by activation of ISR signaling in resting CD4+ T cells
Dajiang Li, Lilly Wong, Yuyang Tang, et al.
iScience (2022) Vol. 26, Iss. 1, pp. 105743-105743
Open Access | Times Cited: 5
Unveiling Novel Double-Negative Prostate Cancer Subtypes Through Single-Cell RNA Sequencing Analysis
Siyuan Cheng, Lin Li, Yunshin Yeh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
GIA: A genome interval arithmetic toolkit for high performance interval set operations
Noam Teyssier, Martin Kampmann, Hani Goodarzi
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Abundant binary promoter switches in lineage-determining transcription factors indicate a digital component of cell fate determination
Hongchuan Li, Md Ahasanur Rahman, Michael Ruesch, et al.
Cell Reports (2023) Vol. 42, Iss. 11, pp. 113454-113454
Open Access | Times Cited: 2

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